XP:molecular function xp regulators

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Rule:

  • xx activator activity -> positively_regulates xx
  • xx regulator activity -> regulates xx
  • xx inhibitor activity -> negatively_regulates xx

Unlike RoBP, we do not use a "biological regulation" genus term (as this is in BP, not MF). We just use the root MF as a genus. Perhaps these are all enzymes? We could use "enzyme regulator" as a genus..

This rule has not yet been implemented in the OE2 semantic parser; Obol is used. Grammar: obol_molecular_function_xp_self. The suffix "activity" is first removed from term strings.

Location:

Browse:

Short term:

convert XPs to normal in-function links

e.g.:

 [Term]
 id: GO:0004860 ! protein kinase inhibitor activity
 intersection_of: GO:0003674 ! molecular_function
 intersection_of: negatively_regulates GO:0004672 ! protein kinase activity

change this to

 [Term]
 id: GO:0004860 ! protein kinase inhibitor activity
 relationship: negatively_regulates GO:0004672 ! protein kinase activity

Medium term (post OE2):

Manage the XPs directly in the main .obo file

Tracker Items

See Also

TODO

Add: co-repressor co-activator