10March09 Phone Conference: Difference between revisions

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==Action Items from electronic jamboree==
==Action Items from electronic jamboree==
* GAF file generated from the wiki page: can everyone have a look and let us know if there are problems with the file?


==PAINT update==
* http://wiki.geneontology.org/index.php/RefGenProgress_2009-02




==PAINT update==
* http://wiki.geneontology.org/index.php/RefGenProgress_2009-02




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** Can we do = carbamoyl-phosphate synthase (ammonia) activity (ISS)  => urea cycle IC
** Can we do = carbamoyl-phosphate synthase (ammonia) activity (ISS)  => urea cycle IC
** ie, does that give two meanings to IC? We can just be careful when we propagate annotations to use IC from EXP?
** ie, does that give two meanings to IC? We can just be careful when we propagate annotations to use IC from EXP?
==Annotating biochemical pathways==
Setting up a working group


==Next conference call==
==Next conference call==

Revision as of 14:49, 9 March 2009

Present

Action Items from electronic jamboree

  • GAF file generated from the wiki page: can everyone have a look and let us know if there are problems with the file?

PAINT update



IC from EXP versus IC from ISS

  • Stems from the electronic jamborees:
    • Mouse = carbamoyl-phosphate synthase (ammonia) activity (IMP) => urea cycle IC
    • Can we do = carbamoyl-phosphate synthase (ammonia) activity (ISS) => urea cycle IC
    • ie, does that give two meanings to IC? We can just be careful when we propagate annotations to use IC from EXP?

Annotating biochemical pathways

Setting up a working group


Next conference call

Tuesday April 14, 2009, 8 AM PDT, 10 AM CDT, 11 AM EST, 4 PM BST


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