https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&feed=atom&action=history
10March09 Phone Conference - Revision history
2024-03-29T05:30:29Z
Revision history for this page on the wiki
MediaWiki 1.40.0
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=73934&oldid=prev
Pascale at 11:38, 9 April 2019
2019-04-09T11:38:15Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 07:38, 9 April 2019</td>
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Pascale
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=73932&oldid=prev
Pascale: Pascale moved page 10March09 Phone Conference (Archived) to 10March09 Phone Conference over redirect
2019-04-09T11:38:01Z
<p>Pascale moved page <a href="/10March09_Phone_Conference_(Archived)" class="mw-redirect" title="10March09 Phone Conference (Archived)">10March09 Phone Conference (Archived)</a> to <a href="/10March09_Phone_Conference" title="10March09 Phone Conference">10March09 Phone Conference</a> over redirect</p>
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<td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 07:38, 9 April 2019</td>
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Pascale
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=66759&oldid=prev
Pascale: Pascale moved page 10March09 Phone Conference to 10March09 Phone Conference (Archived)
2018-01-16T15:23:01Z
<p>Pascale moved page <a href="/10March09_Phone_Conference" title="10March09 Phone Conference">10March09 Phone Conference</a> to <a href="/10March09_Phone_Conference_(Archived)" class="mw-redirect" title="10March09 Phone Conference (Archived)">10March09 Phone Conference (Archived)</a></p>
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Pascale
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=66758&oldid=prev
Pascale at 15:22, 16 January 2018
2018-01-16T15:22:52Z
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pascale, Judy, Kara, Susan, Ranjana, Kimberly, Mike, Stan, Doug, Ruth, Varsha, Donghui, Tanya</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pascale, Judy, Kara, Susan, Ranjana, Kimberly, Mike, Stan, Doug, Ruth, Varsha, Donghui, Tanya</div></td></tr>
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Pascale
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=49229&oldid=prev
Gail at 15:59, 8 April 2014
2014-04-08T15:59:44Z
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Present==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Present==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pascale, Judy, Kara, Susan, Ranjana, Kimberly, Mike, Stan, Doug, Ruth, Varsha, Donghui, Tanya</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pascale, Judy, Kara, Susan, Ranjana, Kimberly, Mike, Stan, Doug, Ruth, Varsha, Donghui, Tanya</div></td></tr>
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Gail
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=19092&oldid=prev
Pascale: /* Action Items from electronic jamboree */
2009-03-30T16:42:02Z
<p><span dir="auto"><span class="autocomment">Action Items from electronic jamboree</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:42, 30 March 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Adding relationships to binding terms in the ontology for enzymes and their substrates : Pascale spoke to Jane- the ontology group will look into that. </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Adding relationships to binding terms in the ontology for enzymes and their substrates : Pascale spoke to Jane- the ontology group will look into that. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* modification-dependent protein catabolic process (GO:0019941) -Suggestion to add synonym as modification-initiated protein catabolic process ; also to add proteolysis as synonym to many terms as required</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* modification-dependent protein catabolic process (GO:0019941) -Suggestion to add synonym as modification-initiated protein catabolic process ; also to add proteolysis as synonym to many terms as required</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Karen: obsolete 'ATP-dependent proteolysis: Not closed yet, why?</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Karen: obsolete 'ATP-dependent proteolysis: Not closed yet, why? <ins style="font-weight: bold; text-decoration: none;">//Closed on 2009-03-13</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>https://sourceforge.net/tracker/index.php?func=detail&aid=2635152&group_id=36855&atid=440764</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>https://sourceforge.net/tracker/index.php?func=detail&aid=2635152&group_id=36855&atid=440764</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Karen: Should we make organelle specific terms for processes [and functions?] that aren't mechanistically different but use different gene sets? This generated a long email discussion; is it resolved? Move to the GOC meeting. : Move to the GOC meeting. </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Karen: Should we make organelle specific terms for processes [and functions?] that aren't mechanistically different but use different gene sets? This generated a long email discussion; is it resolved? Move to the GOC meeting. : Move to the GOC meeting. </div></td></tr>
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Pascale
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=19091&oldid=prev
Pascale: /* Action Items from electronic jamboree */
2009-03-30T16:40:27Z
<p><span dir="auto"><span class="autocomment">Action Items from electronic jamboree</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:40, 30 March 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Karen: obsolete 'ATP-dependent proteolysis: Not closed yet, why?</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Karen: obsolete 'ATP-dependent proteolysis: Not closed yet, why?</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>https://sourceforge.net/tracker/index.php?func=detail&aid=2635152&group_id=36855&atid=440764</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>https://sourceforge.net/tracker/index.php?func=detail&aid=2635152&group_id=36855&atid=440764</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Karen: Should we make organelle specific terms for processes [and functions?] that aren't mechanistically different but use different gene sets? This generated a long email discussion; is it resolved? Move to the GOC meeting. </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Karen: Should we make organelle specific terms for processes [and functions?] that aren't mechanistically different but use different gene sets? This generated a long email discussion; is it resolved? <ins style="font-weight: bold; text-decoration: none;">Move to the GOC meeting. : </ins>Move to the GOC meeting. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Debbie : to circulate where in the documentation it says not to annotate to binding</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Debbie : to circulate where in the documentation it says not to annotate to binding</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ruth: proteolysis synonyms: closed SF:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Ruth: proteolysis synonyms: closed SF:</div></td></tr>
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Pascale
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=18523&oldid=prev
TanyaB at 21:06, 10 March 2009
2009-03-10T21:06:08Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:06, 10 March 2009</td>
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Pascale, Judy, Kara, Susan, Ranjana, Kimberly, Mike, Stan, Doug, Ruth, Varsha</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Pascale, Judy, Kara, Susan, Ranjana, Kimberly, Mike, Stan, Doug, Ruth, Varsha<ins style="font-weight: bold; text-decoration: none;">, Donghui, Tanya</ins></div></td></tr>
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TanyaB
https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=18512&oldid=prev
Pascale at 19:02, 10 March 2009
2009-03-10T19:02:50Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:02, 10 March 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>http://wiki.geneontology.org/index.php/Oregon_Reference_Genomes_Meeting</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>http://wiki.geneontology.org/index.php/Oregon_Reference_Genomes_Meeting</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">==Paper==</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Paper got reviewed: there are a few relatively minor comments to address. </ins></div></td></tr>
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https://wiki.geneontology.org/index.php?title=10March09_Phone_Conference&diff=18509&oldid=prev
Pascale: /* PAINT update */
2009-03-10T18:59:08Z
<p><span dir="auto"><span class="autocomment">PAINT update</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:59, 10 March 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">We dont know when we'll be able to use the tool for annotation yet.</ins></div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==TOP2 annotations==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==TOP2 annotations==</div></td></tr>
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