14 JUNE 2011 RefGen Phone Conference (Archived)

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Present

Pascale dictyBase
Stan RGD
Emily and GOA
Chris BBOP
Judy MGI
Kimberly Wormbase
Ruth BHF-UCL
Varsha BHF-UCL
Dmitry MGI
Bren EcoliWiki
Petra dictyBase
Mike P-POD
Li MGI
Mary MGI
Donghui TAIR
Brenley EcoHub/GOnuts
Rama SGD

ACTION ITEMS

In July we'll have a jamboree on transcription factors
Brenley will set up the GOnuts soon - in advance for the jamboree
Karen to share the 'annotation manual' for transcription factors

Progress on Transcription factors annotation: reports on progress, and on use of the new terms

Varsha and Pascale

MGI has updated most of their TF annotations (BP); due to limited resources, they have not done the MF updates.
GOA is trying to do the updates but it's taking a lot of resources

Recent additions to QuickGO

Emily

Beta version of a QuickGO display of the changes made to the GO ontology over time now available both for specific terms, for example for apoptosis as well as for all terms from here

- anyone have suggestions for display improvements?

This provides complementatary information to Amelia's term definition change display

Display of the occurs_in relationship between cellular component and biological process terms, for instance for GO:0033579 protein galactosylation in endoplasmic reticulum

Call for volunteers to adopt a GO annotation guidance page

http://www.geneontology.org/newIndex.shtml
then click on the Documentation link and then mouse over on Annotaiton.

Feedback on GO_annotation_fields_required_for_correct_display

GO_annotation_fields_required_for_correct_display

Tanya: I would prefer that the date is essential and the assigned by is recommended (rather than essential). I think it's more important to know how old an annotation is than to know who made it.