18 November 2014 PAINT Conference Call
PAINT call Agenda and Minutes Nov. 18, 2014
Participants: Suzi, Paul T, Karen, Huaiyu, Pascale, Marc, Moni, Chris
Agenda
Annotation of families for Synapse Jamboree
Please see email for the PDF files.
- Huaiyu assigned all genes to Panther families
- Huaiyu will mark these on the Google PAINT family annotation tracking as 'Synapse jamboree' https://docs.google.com/spreadsheets/d/1uHgcaXO7t9__9GuXgBibT0H-YlnU252IsRGWIyhCWN8
- Karen will send Huaiyu her notes and Huaiyu will compile the information
- Huaiyu will make all these information available on google drive.
p.s.
- The location for Panther families of the gene list: https://docs.google.com/spreadsheets/d/11AHteWEti0fIal2Gt00Xm1YZFO7FielftZqNyIE0jGY/edit#gid=1657372967
- The location for Karen's annotation: https://docs.google.com/spreadsheets/d/1NX1YJmNTZS8HYCczob-rva8HLxBiCra4ej0HICxywTA/edit#gid=1487994982
Source(s) for annotations from PAINT tool versus Protein2GO (Karen)
Deferred to Managers Call on November 19
Use NOT and STOP (Huaiyu)
When "NOT" annotation is used in PAINT to a node, there are several scenarios. The "NOT" annotation can be applied
- only to the term, but all parent terms are still true.
- to the term and some parent terms, while other parent terms are still true.
- to the term and all parent terms.
Does PAINT support this right now?
Also, according to the user guide, we can use "STOP". Is it still supported by PAINT? I have been using NOT in a lot places that I was supposed to use STOP. I am just concerned these are incorrect representations.