20101108 AnnotationCallMinutes

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Revision as of 15:23, 5 November 2010 by Rama (talk | contribs) (Discussion)

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Annotation Jamboree

The Annotation conference call for November will feature an annotation jamboree.
The call is scheduled for Nov 8, 2010 (Monday) at 8:00 AM California time.

We will try a new format this time. We have picked 2 papers on transcription for this jamboree (yes, they are yeast papers!).
1) PMID 7568152
Role of the GATA factors Gln3p and Nil1p of Saccharomyces cerevisiae in the expression of nitrogen-regulated genes. Stanbrough M, Rowen DW, Magasanik B.
2) PMID 8655543
G1n3p is capable of binding to UAS(NTR) elements and activating transcription in Saccharomyces cerevisiae. Cunningham TS, Svetlov VV, Rai R, Smart W, Cooper TG.

I provided a simple template in my email to enter the annotations (I am unable to upload the template here). But basically provide annotations in the format:

Gene name [tab] GO Aspect [tab] GOID [tab] GO term [tab] Evidence [tab] With/From [tab] Qualifier [tab]comments <br>

Please send your annotations to me by November 3rd and also remember to name your sheet so i know who gave what. I will collate them and upload it on the wiki by Nov 5th. Each curator can send in individual sheets or each MOD can send their consensus sheet to me.

Discussion

Collated annotations for PMID: 7568152 - Role of the GATA factors Gln3p and Nil1p of Saccharomyces cerevisiae in the expression of nitrogen-regulated genes. Stanbrough M, Rowen DW, Magasanik B.
File:Jam7568152.pdf