2010 Bar Harbor Agenda: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
No edit summary
 
(98 intermediate revisions by 18 users not shown)
Line 1: Line 1:
[[Category:GO Consortium Meetings]]
==Tuesday September 7==
==Tuesday September 7==
#10:00-10:30: Review of schedule
* 10:00-10:30: Welcome;  Review of schedule and agenda (Judy)
#10:30 - Noon: review agenda, grant overview
* 10:30 - Noon: Suzi, outline & discuss current draft of [[http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/doc/GO_2011_Specific%20Aims_v4.doc]] specific aims.
#Noon-1:  Lunch
* Noon-1:  Lunch
#1:00-2:30: ref. genome report  
* 1:00-2:30: [[Annotation Advocacy and Coordination|Annotation]] Report (Rama & Rachael)- [[File: BHB2010.pdf]]
#* Manager report(see details below)
*# recent projects - notes/accomplishments
#* other topics
*#* 'binding" group report
#2:30-3:00: break
*#* 'response to' report
#3:00-4:30: annotation report  
*#* 'downstream effect' report
#* Manager report(see details below)
*#* Reciprocal annotations (from binding group)
#* other topics
*#* [[Annotations_to_Catalytic_activity_with_IPI| Annotating to catalytic terms with IPI (report from SGD)]]
#** 'binding" group report
*# initial thoughts on grant renewal
#** 'response to' report
*# objectives for the next 4 & 12 months ([[Annotation Advocacy Roadmap|timeline and objectives]])
#** 'downstream effect' report
*#* Reporting standards
#dinner on your own
*2:30-3:00: break
*3:00-4:30: [[Reference Genome Annotation Project|Ref. Genome]] Report (Pascale & Kara)
Pascale's slides: http://gocwiki.geneontology.org/index.php/File:2010-09-BHB-RefG-progress-report-Pascale.pdf<br>
Kara slides: http://gocwiki.geneontology.org/index.php/File:GO_BarHarbor2010Kara.pdf
*# recent projects - notes/accomplishments
*#* PAINT (Mike L) Slides: http://gocwiki.geneontology.org/index.php/File:Livstone_Bar_Harbor_Sept_2010.pdf
*#* Wnt (Varsha, Suzi and Mike L.)
*#* Loading Panther files into MODs:initial reports (Harold)
*#* Ref. genome project tracking (Sven & Chris)
*#** Amigo slides: http://gocwiki.geneontology.org/index.php/File:Amigo.pdf
*#** P-POD slides: http://gocwiki.geneontology.org/index.php/File:Ppod.pdf
*#* Panther families/subfamilies annotation status report (Mary) Slides: http://gocwiki.geneontology.org/index.php/File:pantherGOreport.pdf
*# initial thoughts on grant renewal (Pascale & Kara)
*# objectives for the next 4 & 12 months ([[Reference Genome Timeline-June-Dec2010|timeline and objectives]])
*<b>dinner on your own</b>


==Wednesday September 8==
==Wednesday September 8==
#8:30-10:00 Ontology Development- Content
*8:30-10:00 [[Ontology Development]] Report (David and Jane)
#* Manager report(see details below)
*# recent projects - notes/accomplishments
#* other topics
*#* Aligning GO with ChEBI (David)
#** Aligning GO with ChEBI (David)
*#* TermGenie demo (Jane)
#** Signaling group update (Becky)
*#* Signaling group update (Becky)[[Media:Signaling.pdf.pdf]]
#10-10:30 Break
*#* Transcription overhaul (Karen) [http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/meeting/consortium/BarHarbor2010/TxnOverhaulKChristie.ppt TxnOverhaulKChristie.ppt]
#10:30-noon Software and Utilities  
*# initial thoughts on grant renewal
#* Manager report(see details below)
*# objectives for the next 4 & 12 months ([[2010 Timeline|2010]] and [[2011 Timeline|2011]] timelines and objectives)
#* other topics
* 10:00-10:30 Break
#** OBO_Edit update
* 10:30-12:00 [[Software and Utilities|Software and Infrastructure]] Report (Chris, Suzi & Mike C)
#noon-1:00: Lunch (OBO-Edit Working Group Lunch Meeting)
*# recent projects - notes/accomplishments
#1:00-2:30: Initial grant discussion: possible aims and objectives
*#* OBO-Edit update. isa-closure/MIREOT support (Amina) (5 mins)
#2:30-3:00  Break
*#* AmiGO labs update (Chris and Seth) (5 mins)
#3:00-4:30  Specific issues for discussion/review
*#* Galaxy integration (Chris) (5 mins)
#* Transcription overhaul (Karen)
*# objectives for the next 4 & 12 months & 5 years and renewal thoughts ([[SWUG Timeline 2010-2011|timeline and objectives]]) (1 hr). Presentation: [[Media:software-group-report-bar-harbor-2010.pdf]]
#* Binding group report
* 12:00-1:00: Lunch (OBO-Edit Working Group Lunch Meeting)
#5:30ish  Dinner at HighSeas
* 1:00-3:00  Inter-Operational issues <br>We will take this time to discuss solutions for infrastructure and best practices where the respective project teams must connect and communicate more effectively.
*# Annotation group:  
*#* Annotation & reference genome groups communication (Pascale and Rama)
*# Reference genome group:  
*#* What would be the best forum to discuss annotation and ontology issues ? wiki? SF? we've been doing a bit of both, plus email. It should be more formalized.( Pascale, Mike L)
*# Ontology development:  
*#* Ontology and annotation (Jane & Rama) : how do ontology development get communicated to the annotation group? do we need to improve communication channels?
*# Software and Infrastructure:  
*#* Delivery of GAFs to MODs (Suzi)
* 3:00 Break for a Hike
 
* <b>7:00 Dinner at HighSeas</b>


==Thursday September 9==
==Thursday September 9==
#8:30-10:00 Future Planning
* 8:30-10:00: Grant planning discussion
#* Management organization
*# Review of Timelines
#*Project tracking
*# Refinement of aims and objectives (Judy: summary of discussions up to this point)
#10:30-noon Open discussion on grant renewal
*#* Overall statement of GOC accomplishments: progress report
#noon - 1 pm  Lunch
*#* Rolea and future of subcontracts to MODs supplemental grants to Princeton, ARRA funding to CL
# 1 pm End of Meeting
*#* Literature annotation (and ontology development)
 
*#* Phylogenetic annotation (and ontology development)
 
*#* Community annotation (and ontology development)
===Structure of manager reports===
*#* What new priorities, strategies, technology aspects are we proposing
*recent project reports
*#** Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,...
*objectives for the next 6 months
*#** Expressivity of annotations: LEGO (Paul T), [[Media:Diehl_Enhanced_Annotation.pdf|Annotation IDs and Dependency]] (Alex)
*objectives for the next 12-18 months
*#* Distribution channels and user support
*initial thoughts on grant renewal
* 10:00-10:30 - break
* 10:30-11:30 Refinement of aims and objectives cont.
* 11:30-noon Review of action items
* noon - 1 pm  Lunch
* <b> End of Meeting </b>


==Discussion topics to fit in==
[[File:DSCN6820b.jpg|400px|thumb|left|GOC Bar Harbor Attendees]]
* Pascale, Mike L: What would be the best forum to discuss annotation and ontology issues ? wiki? SF? we've been doing a bit of both, plus email. It should be more formalized.

Latest revision as of 16:13, 7 April 2014

Tuesday September 7

  • 10:00-10:30: Welcome; Review of schedule and agenda (Judy)
  • 10:30 - Noon: Suzi, outline & discuss current draft of [[1]] specific aims.
  • Noon-1: Lunch
  • 1:00-2:30: Annotation Report (Rama & Rachael)- File:BHB2010.pdf
    1. recent projects - notes/accomplishments
    2. initial thoughts on grant renewal
    3. objectives for the next 4 & 12 months (timeline and objectives)
      • Reporting standards
  • 2:30-3:00: break
  • 3:00-4:30: Ref. Genome Report (Pascale & Kara)

Pascale's slides: http://gocwiki.geneontology.org/index.php/File:2010-09-BHB-RefG-progress-report-Pascale.pdf
Kara slides: http://gocwiki.geneontology.org/index.php/File:GO_BarHarbor2010Kara.pdf

Wednesday September 8

  • 8:30-10:00 Ontology Development Report (David and Jane)
    1. recent projects - notes/accomplishments
    2. initial thoughts on grant renewal
    3. objectives for the next 4 & 12 months (2010 and 2011 timelines and objectives)
  • 10:00-10:30 Break
  • 10:30-12:00 Software and Infrastructure Report (Chris, Suzi & Mike C)
    1. recent projects - notes/accomplishments
      • OBO-Edit update. isa-closure/MIREOT support (Amina) (5 mins)
      • AmiGO labs update (Chris and Seth) (5 mins)
      • Galaxy integration (Chris) (5 mins)
    2. objectives for the next 4 & 12 months & 5 years and renewal thoughts (timeline and objectives) (1 hr). Presentation: Media:software-group-report-bar-harbor-2010.pdf
  • 12:00-1:00: Lunch (OBO-Edit Working Group Lunch Meeting)
  • 1:00-3:00 Inter-Operational issues
    We will take this time to discuss solutions for infrastructure and best practices where the respective project teams must connect and communicate more effectively.
    1. Annotation group:
      • Annotation & reference genome groups communication (Pascale and Rama)
    2. Reference genome group:
      • What would be the best forum to discuss annotation and ontology issues ? wiki? SF? we've been doing a bit of both, plus email. It should be more formalized.( Pascale, Mike L)
    3. Ontology development:
      • Ontology and annotation (Jane & Rama) : how do ontology development get communicated to the annotation group? do we need to improve communication channels?
    4. Software and Infrastructure:
      • Delivery of GAFs to MODs (Suzi)
  • 3:00 Break for a Hike
  • 7:00 Dinner at HighSeas

Thursday September 9

  • 8:30-10:00: Grant planning discussion
    1. Review of Timelines
    2. Refinement of aims and objectives (Judy: summary of discussions up to this point)
      • Overall statement of GOC accomplishments: progress report
      • Rolea and future of subcontracts to MODs supplemental grants to Princeton, ARRA funding to CL
      • Literature annotation (and ontology development)
      • Phylogenetic annotation (and ontology development)
      • Community annotation (and ontology development)
      • What new priorities, strategies, technology aspects are we proposing
        • Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,...
        • Expressivity of annotations: LEGO (Paul T), Annotation IDs and Dependency (Alex)
      • Distribution channels and user support
  • 10:00-10:30 - break
  • 10:30-11:30 Refinement of aims and objectives cont.
  • 11:30-noon Review of action items
  • noon - 1 pm Lunch
  • End of Meeting
GOC Bar Harbor Attendees