2010 Bar Harbor Agenda: Difference between revisions
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[[Category:GO Consortium Meetings]] | |||
==Tuesday September 7== | ==Tuesday September 7== | ||
* 10:00-10:30: Welcome; Review of schedule and agenda (Judy) | * 10:00-10:30: Welcome; Review of schedule and agenda (Judy) | ||
* 10:30 - Noon: Suzi, outline & discuss current draft of [[http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/doc/GO_2011_Specific%20Aims_v4.doc]] specific aims. | * 10:30 - Noon: Suzi, outline & discuss current draft of [[http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/doc/GO_2011_Specific%20Aims_v4.doc]] specific aims. | ||
* Noon-1: Lunch | * Noon-1: Lunch | ||
* 1:00-2:30: [[Annotation Advocacy and Coordination|Annotation]] Report (Rama & | * 1:00-2:30: [[Annotation Advocacy and Coordination|Annotation]] Report (Rama & Rachael)- [[File: BHB2010.pdf]] | ||
*# recent projects - notes/accomplishments | *# recent projects - notes/accomplishments | ||
*#* 'binding" group report | *#* 'binding" group report | ||
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*#* Reporting standards | *#* Reporting standards | ||
*2:30-3:00: break | *2:30-3:00: break | ||
*3:00-4:30: [[Reference Genome Annotation Project|Ref. Genome]] Report (Pascale & Kara) | *3:00-4:30: [[Reference Genome Annotation Project|Ref. Genome]] Report (Pascale & Kara) | ||
Pascale's slides: http://gocwiki.geneontology.org/index.php/File:2010-09-BHB-RefG-progress-report-Pascale.pdf<br> | |||
Kara slides: http://gocwiki.geneontology.org/index.php/File:GO_BarHarbor2010Kara.pdf | |||
*# recent projects - notes/accomplishments | *# recent projects - notes/accomplishments | ||
*#* PAINT (Mike L) Slides: http://gocwiki.geneontology.org/index.php/File:Livstone_Bar_Harbor_Sept_2010.pdf | *#* PAINT (Mike L) Slides: http://gocwiki.geneontology.org/index.php/File:Livstone_Bar_Harbor_Sept_2010.pdf | ||
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*#* Loading Panther files into MODs:initial reports (Harold) | *#* Loading Panther files into MODs:initial reports (Harold) | ||
*#* Ref. genome project tracking (Sven & Chris) | *#* Ref. genome project tracking (Sven & Chris) | ||
*#* Panther annotation status (Mary) | *#** Amigo slides: http://gocwiki.geneontology.org/index.php/File:Amigo.pdf | ||
*#** P-POD slides: http://gocwiki.geneontology.org/index.php/File:Ppod.pdf | |||
*#* Panther families/subfamilies annotation status report (Mary) Slides: http://gocwiki.geneontology.org/index.php/File:pantherGOreport.pdf | |||
*# initial thoughts on grant renewal (Pascale & Kara) | *# initial thoughts on grant renewal (Pascale & Kara) | ||
*# objectives for the next 4 & 12 months ([[Reference Genome Timeline-June-Dec2010|timeline and objectives]]) | *# objectives for the next 4 & 12 months ([[Reference Genome Timeline-June-Dec2010|timeline and objectives]]) | ||
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*#* Aligning GO with ChEBI (David) | *#* Aligning GO with ChEBI (David) | ||
*#* TermGenie demo (Jane) | *#* TermGenie demo (Jane) | ||
*#* Signaling group update (Becky) | *#* Signaling group update (Becky)[[Media:Signaling.pdf.pdf]] | ||
*#* Transcription overhaul (Karen) | *#* Transcription overhaul (Karen) [http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/meeting/consortium/BarHarbor2010/TxnOverhaulKChristie.ppt TxnOverhaulKChristie.ppt] | ||
*# initial thoughts on grant renewal | *# initial thoughts on grant renewal | ||
*# objectives for the next 4 & 12 months ([[2010 Timeline|2010]] and [[2011 Timeline|2011]] timelines and objectives) | *# objectives for the next 4 & 12 months ([[2010 Timeline|2010]] and [[2011 Timeline|2011]] timelines and objectives) | ||
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*#* AmiGO labs update (Chris and Seth) (5 mins) | *#* AmiGO labs update (Chris and Seth) (5 mins) | ||
*#* Galaxy integration (Chris) (5 mins) | *#* Galaxy integration (Chris) (5 mins) | ||
*# objectives for the next 4 & 12 months & 5 years and renewal thoughts ([[SWUG Timeline 2010-2011|timeline and objectives]]) (1 hr) | *# objectives for the next 4 & 12 months & 5 years and renewal thoughts ([[SWUG Timeline 2010-2011|timeline and objectives]]) (1 hr). Presentation: [[Media:software-group-report-bar-harbor-2010.pdf]] | ||
* 12:00-1:00: Lunch (OBO-Edit Working Group Lunch Meeting) | * 12:00-1:00: Lunch (OBO-Edit Working Group Lunch Meeting) | ||
* 1:00-3:00 Inter-Operational issues <br>We will take this time to discuss solutions for infrastructure and best practices where the respective project teams must connect and communicate more effectively. | * 1:00-3:00 Inter-Operational issues <br>We will take this time to discuss solutions for infrastructure and best practices where the respective project teams must connect and communicate more effectively. | ||
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*#* What new priorities, strategies, technology aspects are we proposing | *#* What new priorities, strategies, technology aspects are we proposing | ||
*#** Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,... | *#** Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,... | ||
*#** Expressivity of annotations: LEGO (Paul T) | *#** Expressivity of annotations: LEGO (Paul T), [[Media:Diehl_Enhanced_Annotation.pdf|Annotation IDs and Dependency]] (Alex) | ||
*#* Distribution channels and user support | *#* Distribution channels and user support | ||
* 10:00-10:30 - break | * 10:00-10:30 - break | ||
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* <b> End of Meeting </b> | * <b> End of Meeting </b> | ||
[[ | [[File:DSCN6820b.jpg|400px|thumb|left|GOC Bar Harbor Attendees]] |
Latest revision as of 16:13, 7 April 2014
Tuesday September 7
- 10:00-10:30: Welcome; Review of schedule and agenda (Judy)
- 10:30 - Noon: Suzi, outline & discuss current draft of [[1]] specific aims.
- Noon-1: Lunch
- 1:00-2:30: Annotation Report (Rama & Rachael)- File:BHB2010.pdf
- recent projects - notes/accomplishments
- 'binding" group report
- 'response to' report
- 'downstream effect' report
- Reciprocal annotations (from binding group)
- Annotating to catalytic terms with IPI (report from SGD)
- initial thoughts on grant renewal
- objectives for the next 4 & 12 months (timeline and objectives)
- Reporting standards
- recent projects - notes/accomplishments
- 2:30-3:00: break
- 3:00-4:30: Ref. Genome Report (Pascale & Kara)
Pascale's slides: http://gocwiki.geneontology.org/index.php/File:2010-09-BHB-RefG-progress-report-Pascale.pdf
Kara slides: http://gocwiki.geneontology.org/index.php/File:GO_BarHarbor2010Kara.pdf
- recent projects - notes/accomplishments
- PAINT (Mike L) Slides: http://gocwiki.geneontology.org/index.php/File:Livstone_Bar_Harbor_Sept_2010.pdf
- Wnt (Varsha, Suzi and Mike L.)
- Loading Panther files into MODs:initial reports (Harold)
- Ref. genome project tracking (Sven & Chris)
- Amigo slides: http://gocwiki.geneontology.org/index.php/File:Amigo.pdf
- P-POD slides: http://gocwiki.geneontology.org/index.php/File:Ppod.pdf
- Panther families/subfamilies annotation status report (Mary) Slides: http://gocwiki.geneontology.org/index.php/File:pantherGOreport.pdf
- initial thoughts on grant renewal (Pascale & Kara)
- objectives for the next 4 & 12 months (timeline and objectives)
- recent projects - notes/accomplishments
- dinner on your own
Wednesday September 8
- 8:30-10:00 Ontology Development Report (David and Jane)
- recent projects - notes/accomplishments
- Aligning GO with ChEBI (David)
- TermGenie demo (Jane)
- Signaling group update (Becky)Media:Signaling.pdf.pdf
- Transcription overhaul (Karen) TxnOverhaulKChristie.ppt
- initial thoughts on grant renewal
- objectives for the next 4 & 12 months (2010 and 2011 timelines and objectives)
- recent projects - notes/accomplishments
- 10:00-10:30 Break
- 10:30-12:00 Software and Infrastructure Report (Chris, Suzi & Mike C)
- recent projects - notes/accomplishments
- OBO-Edit update. isa-closure/MIREOT support (Amina) (5 mins)
- AmiGO labs update (Chris and Seth) (5 mins)
- Galaxy integration (Chris) (5 mins)
- objectives for the next 4 & 12 months & 5 years and renewal thoughts (timeline and objectives) (1 hr). Presentation: Media:software-group-report-bar-harbor-2010.pdf
- recent projects - notes/accomplishments
- 12:00-1:00: Lunch (OBO-Edit Working Group Lunch Meeting)
- 1:00-3:00 Inter-Operational issues
We will take this time to discuss solutions for infrastructure and best practices where the respective project teams must connect and communicate more effectively.- Annotation group:
- Annotation & reference genome groups communication (Pascale and Rama)
- Reference genome group:
- What would be the best forum to discuss annotation and ontology issues ? wiki? SF? we've been doing a bit of both, plus email. It should be more formalized.( Pascale, Mike L)
- Ontology development:
- Ontology and annotation (Jane & Rama) : how do ontology development get communicated to the annotation group? do we need to improve communication channels?
- Software and Infrastructure:
- Delivery of GAFs to MODs (Suzi)
- Annotation group:
- 3:00 Break for a Hike
- 7:00 Dinner at HighSeas
Thursday September 9
- 8:30-10:00: Grant planning discussion
- Review of Timelines
- Refinement of aims and objectives (Judy: summary of discussions up to this point)
- Overall statement of GOC accomplishments: progress report
- Rolea and future of subcontracts to MODs supplemental grants to Princeton, ARRA funding to CL
- Literature annotation (and ontology development)
- Phylogenetic annotation (and ontology development)
- Community annotation (and ontology development)
- What new priorities, strategies, technology aspects are we proposing
- Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,...
- Expressivity of annotations: LEGO (Paul T), Annotation IDs and Dependency (Alex)
- Distribution channels and user support
- 10:00-10:30 - break
- 10:30-11:30 Refinement of aims and objectives cont.
- 11:30-noon Review of action items
- noon - 1 pm Lunch
- End of Meeting