Difference between revisions of "2010 Bar Harbor Agenda"

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[[Category:GO Consortium Meetings]]
 
==Tuesday September 7==
 
==Tuesday September 7==
 
* 10:00-10:30: Welcome;  Review of schedule and agenda (Judy)
 
* 10:00-10:30: Welcome;  Review of schedule and agenda (Judy)
 
* 10:30 - Noon: Suzi, outline & discuss current draft of [[http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/doc/GO_2011_Specific%20Aims_v4.doc]] specific aims.
 
* 10:30 - Noon: Suzi, outline & discuss current draft of [[http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/doc/GO_2011_Specific%20Aims_v4.doc]] specific aims.
 
* Noon-1:  Lunch
 
* Noon-1:  Lunch
* 1:00-2:30: [[Annotation Advocacy and Coordination|Annotation]] Report (Rama & Emily)- [[File: BHB2010.pdf]]
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* 1:00-2:30: [[Annotation Advocacy and Coordination|Annotation]] Report (Rama & Rachael)- [[File: BHB2010.pdf]]
 
*# recent projects - notes/accomplishments
 
*# recent projects - notes/accomplishments
 
*#* 'binding" group report
 
*#* 'binding" group report
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*#** Amigo slides: http://gocwiki.geneontology.org/index.php/File:Amigo.pdf
 
*#** Amigo slides: http://gocwiki.geneontology.org/index.php/File:Amigo.pdf
 
*#** P-POD slides: http://gocwiki.geneontology.org/index.php/File:Ppod.pdf
 
*#** P-POD slides: http://gocwiki.geneontology.org/index.php/File:Ppod.pdf
*#* Panther annotation status (Mary)
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*#* Panther families/subfamilies annotation status report (Mary) Slides: http://gocwiki.geneontology.org/index.php/File:pantherGOreport.pdf
 
*# initial thoughts on grant renewal (Pascale & Kara)
 
*# initial thoughts on grant renewal (Pascale & Kara)
 
*# objectives for the next 4 & 12 months ([[Reference Genome Timeline-June-Dec2010|timeline and objectives]])
 
*# objectives for the next 4 & 12 months ([[Reference Genome Timeline-June-Dec2010|timeline and objectives]])
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*#* TermGenie demo (Jane)
 
*#* TermGenie demo (Jane)
 
*#* Signaling group update (Becky)[[Media:Signaling.pdf.pdf]]
 
*#* Signaling group update (Becky)[[Media:Signaling.pdf.pdf]]
*#* Transcription overhaul (Karen)
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*#* Transcription overhaul (Karen) [http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/meeting/consortium/BarHarbor2010/TxnOverhaulKChristie.ppt TxnOverhaulKChristie.ppt]
 
*# initial thoughts on grant renewal
 
*# initial thoughts on grant renewal
 
*# objectives for the next 4 & 12 months ([[2010 Timeline|2010]] and [[2011 Timeline|2011]] timelines and objectives)
 
*# objectives for the next 4 & 12 months ([[2010 Timeline|2010]] and [[2011 Timeline|2011]] timelines and objectives)
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*#* What new priorities, strategies, technology aspects are we proposing  
 
*#* What new priorities, strategies, technology aspects are we proposing  
 
*#** Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,...
 
*#** Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,...
*#** Expressivity of annotations: LEGO (Paul T)
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*#** Expressivity of annotations: LEGO (Paul T), [[Media:Diehl_Enhanced_Annotation.pdf|Annotation IDs and Dependency]] (Alex)
 
*#* Distribution channels and user support
 
*#* Distribution channels and user support
 
* 10:00-10:30 - break
 
* 10:00-10:30 - break
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* <b> End of Meeting </b>
 
* <b> End of Meeting </b>
  
[[Category:Bar_Harbor_2010]]
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[[File:DSCN6820b.jpg|400px|thumb|left|GOC Bar Harbor Attendees]]

Latest revision as of 13:13, 7 April 2014

Tuesday September 7

  • 10:00-10:30: Welcome; Review of schedule and agenda (Judy)
  • 10:30 - Noon: Suzi, outline & discuss current draft of [[1]] specific aims.
  • Noon-1: Lunch
  • 1:00-2:30: Annotation Report (Rama & Rachael)- File:BHB2010.pdf
    1. recent projects - notes/accomplishments
    2. initial thoughts on grant renewal
    3. objectives for the next 4 & 12 months (timeline and objectives)
      • Reporting standards
  • 2:30-3:00: break
  • 3:00-4:30: Ref. Genome Report (Pascale & Kara)

Pascale's slides: http://gocwiki.geneontology.org/index.php/File:2010-09-BHB-RefG-progress-report-Pascale.pdf
Kara slides: http://gocwiki.geneontology.org/index.php/File:GO_BarHarbor2010Kara.pdf

Wednesday September 8

  • 8:30-10:00 Ontology Development Report (David and Jane)
    1. recent projects - notes/accomplishments
    2. initial thoughts on grant renewal
    3. objectives for the next 4 & 12 months (2010 and 2011 timelines and objectives)
  • 10:00-10:30 Break
  • 10:30-12:00 Software and Infrastructure Report (Chris, Suzi & Mike C)
    1. recent projects - notes/accomplishments
      • OBO-Edit update. isa-closure/MIREOT support (Amina) (5 mins)
      • AmiGO labs update (Chris and Seth) (5 mins)
      • Galaxy integration (Chris) (5 mins)
    2. objectives for the next 4 & 12 months & 5 years and renewal thoughts (timeline and objectives) (1 hr). Presentation: Media:software-group-report-bar-harbor-2010.pdf
  • 12:00-1:00: Lunch (OBO-Edit Working Group Lunch Meeting)
  • 1:00-3:00 Inter-Operational issues
    We will take this time to discuss solutions for infrastructure and best practices where the respective project teams must connect and communicate more effectively.
    1. Annotation group:
      • Annotation & reference genome groups communication (Pascale and Rama)
    2. Reference genome group:
      • What would be the best forum to discuss annotation and ontology issues ? wiki? SF? we've been doing a bit of both, plus email. It should be more formalized.( Pascale, Mike L)
    3. Ontology development:
      • Ontology and annotation (Jane & Rama) : how do ontology development get communicated to the annotation group? do we need to improve communication channels?
    4. Software and Infrastructure:
      • Delivery of GAFs to MODs (Suzi)
  • 3:00 Break for a Hike
  • 7:00 Dinner at HighSeas

Thursday September 9

  • 8:30-10:00: Grant planning discussion
    1. Review of Timelines
    2. Refinement of aims and objectives (Judy: summary of discussions up to this point)
      • Overall statement of GOC accomplishments: progress report
      • Rolea and future of subcontracts to MODs supplemental grants to Princeton, ARRA funding to CL
      • Literature annotation (and ontology development)
      • Phylogenetic annotation (and ontology development)
      • Community annotation (and ontology development)
      • What new priorities, strategies, technology aspects are we proposing
        • Groups we might work more closely with (and perhaps additional funding opportunities): PRO, LAMHDI, ICGC, bacterial, Reactome,...
        • Expressivity of annotations: LEGO (Paul T), Annotation IDs and Dependency (Alex)
      • Distribution channels and user support
  • 10:00-10:30 - break
  • 10:30-11:30 Refinement of aims and objectives cont.
  • 11:30-noon Review of action items
  • noon - 1 pm Lunch
  • End of Meeting
GOC Bar Harbor Attendees