2010 GO camp Geneva minutes: Difference between revisions
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*** between GO ontologies | *** between GO ontologies | ||
*** external ontologies (cell ontology; CHEBI) | *** external ontologies (cell ontology; CHEBI) | ||
* Ontology development | |||
** large scale targeted projects | |||
** logical consistency | |||
** small scale requests (Sourceforge tracker; future via Amigo) | |||
==== Annotation Process ==== | ==== Annotation Process ==== |
Revision as of 03:44, 16 June 2010
Day 1 morning session
9:00 Introductions and objectives of the meeting
- Introductions & Logistics: Serenella Ferro Rojas
- Poll for Thursday lunch reservations, depending on weather.
- Dinner at Brasserie la Bourse on the Carouge
- ~ 1.9 km from meeting site
Friday Reception at noon for Amos Bairoch celebration of the Otto Naegeli prize.
Introductions
Goals: Pascale Gaudet
GO – Ontology, annotation, tools and technical aspects
Chairs: Serenella Ferro Rojas and Pascale Gaudet
GO overview
An introduction to the GO ontology : terms, definitions, synonyms, relationships, cross-products. Jane Lomax
- Inter-ontology links
- Most tools don't make inferences across the ontoogies. Make redundant annotations.
- Cross products
- between GO ontologies
- external ontologies (cell ontology; CHEBI)
- Ontology development
- large scale targeted projects
- logical consistency
- small scale requests (Sourceforge tracker; future via Amigo)
Annotation Process
- General overview of the annotation guidelines used by GO, and contributing resources. Rama Balakrishnan (15 min)
- General overview UniProtKB/SwissProt manual annotation. Serenella (15 min)
10: 30 Binding documentation
- Chairs: Ruth Lovering and Ursula Hinz
- Minutes: Jim Hu - Damien Lieberherr
- Working group: 2010_GO_camp_working_groups_composition
- Working group notes: Binding documentation issues
12:30 Lunch