2010 GO camp Meeting Agenda
Day 1 morning session
Introductions and objectives of the meeting
Serenella Ferro Rojas and Pascale Gaudet
GO – Ontology, tools and technical aspects
- An introduction to the GO ontology : terms, definitions, relationships, cross-products. Future developments to the annotation format – GAF2.0 (Including presentation of column 16) The extended GO OBO format (GO editor: Jane Lomax)
- GO browsers: Amigo and QuickGO (Rachael Huntley)
- Introduction to the Reference Genome Project (Pascale Gaudet)
- Annotation extensions: column 16
Day 1 afternoon session: Focused annotation Session 1
Binding documentation
- Chair: Ursula Hinz and [TBA]
- Working group: 2010_GO_camp_working_groups_composition
- Working group should keep notes here: Binding documentation issues
Annotation of complexes
- Chair: Pascale Gaudet and Berndt Roechert
- Working group: 2010_GO_camp_working_groups_composition
- Working group should keep notes here: Annotation of complexes issues
Annotation of HTP data: reviewing the guidelines
Chairs: Rama Balakrishnan and TBA from Swiss-Prot
- Working group: 2010_GO_camp_working_groups_composition
- Working group should keep notes here: Annotation of HTP data
- Rama : SGD practices
- Swiss-Prot practices
Day 2 morning session: Focused annotation Session 2
Response to terms
- Chair:
- Working group: 2010_GO_camp_working_groups_composition
- Working group should keep notes here: Response to terms issues
How is a downstream effect defined
Chair:
Working group: 2010_GO_camp_working_groups_composition
- Working group should keep notes here: Downstream effect issues
Day 2 afternoon session
Annotation propagation rules and Paint tool
- Chairs: Paul Thomas, Alan Bridge
- Working group: 2010_GO_camp_working_groups_composition
- Working group should keep notes here: Annotation propagation rules
- Review of the annotation guidelines used by GO, UniProt and other contributing resources(e.g. Ensembl compara), questions/discussions
- PAINT software and examples
Day 3 morning session:
Use of Regulation
- Chairs
- Working group: 2010_GO_camp_working_groups_composition
- Working group should keep notes here: Use of Regulation issues
Day 3 afternoon session: Future plans
- Chairs: Suzi and Pascale
- Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
- Annotation process
- Annotation infrastructure
- Co-annotation/verification system
Closing discussion and summary of meeting
Pascale Gaudet
Other suggestions for agenda items
- What is the bottle neck for manual annotations (with experimental evidence)? How can we step up manual curation? (Rama)
- How are the various annotating groups keeping with all the ontology development/changes (new relationships specifically)? (Rama)
- How to define the limits of ISS propagation from phylogenetic studies ? (Manu)
- How to distinguish between large-scale experiments (LSE) and specific experiments derived GO annotation ? PubMed list of LSE, additional tags ?!? (Manu)