2010 GO camp working groups composition: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
m (Created page with ' ==Use of regulation== {| {{Prettytable}} class='sortable' |- ! Name ! Group ! Will be present Y/N ! Will be attending remotely Y/N |- | | | | |} ==Downstream effects ==')
 
mNo edit summary
 
(146 intermediate revisions by 34 users not shown)
Line 1: Line 1:
[[Category:Workshops - 2010 GO Annotation Camp]]
==Use of regulation==
'''Chairs: Jane Lomax and Kimberly VanAuken'''
* Email: jane -at- ebi.ac.uk
* WG email: regulation@geneontology.org
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/regulation
{| {{Prettytable}} class='sortable'
|-
! Name
! Group
! Will be present at the camp Y/N
! Will be attending remotely Y/N
|-
| Fiona
| AgBase
| N
| Y
|-
| Rachael
| GOA
| Y
| N
|-
| Val
| GeneDB_Spombe
| ?
| ?
|-
| Yasmin
| GOA
| Y
| N
|-
| Kimberly
| WB
| Y
| N
|-
|-
| Varsha
| BHF-UCL
| Y
| -
|-
| Ruth
| BHF-UCL
| Y
| -
|-
| Jennifer
| RGD
| ?
| ?
|-
| Jane
| GO-EBI
| Y
| -
|-
| Tim
| RGD
| N
| N
|-
| David
| MGI
| N
| N
|-
| Suzi
| BBOP
| Y
| N
|-
| Lionel Breuza
| SP
| Y
| -
|-
|}
==Downstream effects ==
'''Chair: Rachael Huntley and Varsha Khodiyar'''
* Email: huntley -at - ebi.ac.uk  --- v.khodiyar - at - ucl.ac.uk
* WG email: downstream-effect -at- geneontology.org
* Sign up to the WG: http://fafner.stanford.edu/mailman/listinfo/downstream-effect
{| {{Prettytable}} class='sortable'
|-
! Name
! Group
! Will be present at the camp Y/N
! Will be attending remotely Y/N
|-
| Fiona
| AgBase
| N
| Y
|-
| Rachael
| GOA
| Y
| N
|-
|  Val
| GeneDB_Spombe
| ?
| ?
|-
| Yasmin
| GOA
| Y
| N
|-
|Ranjana
|WormBase
|N
|If time zones permit
|-
|Li
|MGI
|Y
|N
|-
| Varsha
| BHF-UCL
| Y
| -
|-
| Ruth
| BHF-UCL
| Y
| -
|-
| Jennifer
| RGD
| ?
| ?
|-
| Suzi
| BBOP
| Y
| N
|-
| Sylvain
| SIB
| Y
|
|-
| Ursula
| SIB
| Y
|
|-
| Rama
| SGD
| Y
|
|-
| Alex
| MGI
|
|
|-
| Pascale
| DictyBase
| Y
|
|-
| Serenella
| SIB
| Y
|
|-
| Tim
| RGD
|
|
|-
| Alan Ruttenberg
| MIT
|
|
|-
|}
==Response to terms==
'''Chair: Rebecca Foulger and Pascale Gaudet'''
*  Email: rfoulger - at - ebi.ac.uk
* There is no email list for this group
{| {{Prettytable}} class='sortable'
|-
! Name
! Group
! Will be present at the camp Y/N
! Will be attending remotely Y/N
|-
| Pascale
| dictyBase
| Y
| -
|-
| Stan
| RGD
| N
| Y
|-
| Susan
| FlyBase
| Y
| -
|-
| Rebecca
| UniProt
| Y
| -
|-
| Yasmin
| GOA
| Y
| N
|-
|-
| Varsha
| BHF-UCL
| Y
| -
|-
|Li
|MGI
|Y
|N
|-
| Manu
| Swiss-Prot
| Y
|
|-
| Ruth
| BHF-UCL
| Y
| -
|-
| Jane
| GO-EBI
| Y
|
|-
|-
|}


==Use of regulation==
==Binding documentation==
'''Chair: Ruth Lovering and Ursula Hinz '''
* Email : r.lovering - at- ucl.ac.uk
* WG email: binding - at - genome.stanford.edu
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/binding


{| {{Prettytable}} class='sortable'
{| {{Prettytable}} class='sortable'
Line 6: Line 263:
! Name
! Name
! Group
! Group
! Will be present Y/N
! Will be present at the camp Y/N
! Will be attending remotely Y/N
! Will be attending remotely Y/N
|-
|-
| Ruth
| BHF-UCL
| Y
|  
|  
|-
|Lakshmi
|AgBase
|N
|Y
|-
|Harold
|MGI
|N
|Y
|-
|Rebecca
|UniProt
|Y
|N
|-
|Tom
|RGD
|N
|Y
|-
|Emily
|GOA
|N
|Y
|-
|Ursula Hinz
|Swiss-Prot
|Y
|-
| Debby Siegele
| EcoliWiki
| Y
|
|-
| Shur-Jen
| RGD
| N
| Y
|-
|Serenella Ferro Rojas
|Swiss-Prot
|Y
|-
|Elisabeth Coudert
|Swiss-Prot
|Y
|-
|}
==Annotation of protein complexes==
'''Chair: Pascale Gaudet and  Bernd Roechert
* Email: pgaudet -at- northwestern.edu
* WG email: protein-complexes -at- geneontology.org.
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/protein-complexes
{| {{Prettytable}} class='sortable'
|-
! Name
! Group
! Will be present at the camp Y/N
! Will be attending remotely Y/N
|-
| Pascale
| dictyBase
| Y
| -
|-
| Serenella
| Swiss-Prot
| Y
| -
|-
| Harold
| MGI
| N
| Y
|-
| Val
| GeneDB_Spombe
| ?
| ?
|-
| Emily
| GOA
| N
| Y
|-
| Bernd Roechert
| Swiss-Prot
|Y
|-
|-
|Tom
|RGD
|N
|Y
|-
|-
|Silvia J.
|Swiss-Prot
|Y
|-
|Sylvain Poux
| SP
| Y
|
|-
| Suzi
| BBOP
| Y
| N
|-
|-
|}
==Annotation Propagation Rules==
* Chair: Alan Bridge and Paul Thomas
* Email : alan.bridge -at- isb-sib.ch
* This working group has no dedicated email list.
{| {{Prettytable}} class='sortable'
|-
! Name
! Group
! Will be present at the camp Y/N
! Will be attending remotely Y/N
|-
| Paul Thomas
| Panther
| Y
| NA
|-
| Pascale Gaudet
| dictybase
| Y
| NA
|-
| Mike Livstone
| PPOD
|  
|  
|  
|  
|-
| Rachael Huntley
| GOA
| Y
| NA
|-
| Li Ni
| MGI
| Y
| NA
|-
| Serenella Ferro Rojas
| SP
| Y
| NA
|-
| Suzi
| BBOP
| Y
| N
|-
|Sylvain Poux
| SP
| Y
|
|-
| Silvia Braconi Quintaje
| SP
| Y
|  
|  
|-
|Ivo Pedruzzi
| SP
| Y
|
|-
|Catherine Rivoire
| SP
| Y
|
|-
|Elisabeth Coudert
| SP
| Y
|}
|}


==Downstream effects ==
==Annotation of HTP data==
'''Chair: Rama Balakrishnan'''
* Email: rama -at- genome.stanford.edu
* This working group has no dedicated email list.
 
{| {{Prettytable}} class='sortable'
|-
! Name
! Group
! Will be present at the camp Y/N
! Will be attending remotely Y/N
|-
| Rama
| SGD
|
|-
| Manu
| Swiss-Prot
| Y
|
|-
| Silvia J.
| Swiss-Prot
| Y
|
|-
| Ruth
| BHF-UCL
| Y
|
|-
| Emily
| GOA
| N
| Y
|-
| Li Ni
| MGI
| Y
|
|-
|Susan T.
| FlyBase
| Y
|
|-
|Pascale Gaudet
| dictybase
| Y
|
|-
|Alan Bridge
| SP
| Y
|
|-
| Suzi
| BBOP
| Y
| N
|-
|}
----

Latest revision as of 08:17, 22 February 2023

Use of regulation

Chairs: Jane Lomax and Kimberly VanAuken

Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Fiona AgBase N Y
Rachael GOA Y N
Val GeneDB_Spombe ? ?
Yasmin GOA Y N
Kimberly WB Y N
Varsha BHF-UCL Y -
Ruth BHF-UCL Y -
Jennifer RGD ? ?
Jane GO-EBI Y -
Tim RGD N N
David MGI N N
Suzi BBOP Y N
Lionel Breuza SP Y -

Downstream effects

Chair: Rachael Huntley and Varsha Khodiyar


Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Fiona AgBase N Y
Rachael GOA Y N
Val GeneDB_Spombe ? ?
Yasmin GOA Y N
Ranjana WormBase N If time zones permit
Li MGI Y N
Varsha BHF-UCL Y -
Ruth BHF-UCL Y -
Jennifer RGD ? ?
Suzi BBOP Y N
Sylvain SIB Y
Ursula SIB Y
Rama SGD Y
Alex MGI
Pascale DictyBase Y
Serenella SIB Y
Tim RGD
Alan Ruttenberg MIT

Response to terms

Chair: Rebecca Foulger and Pascale Gaudet

  • Email: rfoulger - at - ebi.ac.uk
  • There is no email list for this group
Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Pascale dictyBase Y -
Stan RGD N Y
Susan FlyBase Y -
Rebecca UniProt Y -
Yasmin GOA Y N
Varsha BHF-UCL Y -
Li MGI Y N
Manu Swiss-Prot Y
Ruth BHF-UCL Y -
Jane GO-EBI Y

Binding documentation

Chair: Ruth Lovering and Ursula Hinz

Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Ruth BHF-UCL Y
Lakshmi AgBase N Y
Harold MGI N Y
Rebecca UniProt Y N
Tom RGD N Y
Emily GOA N Y
Ursula Hinz Swiss-Prot Y
Debby Siegele EcoliWiki Y
Shur-Jen RGD N Y
Serenella Ferro Rojas Swiss-Prot Y
Elisabeth Coudert Swiss-Prot Y

Annotation of protein complexes

Chair: Pascale Gaudet and Bernd Roechert

Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Pascale dictyBase Y -
Serenella Swiss-Prot Y -
Harold MGI N Y
Val GeneDB_Spombe ? ?
Emily GOA N Y
Bernd Roechert Swiss-Prot Y
Tom RGD N Y
Silvia J. Swiss-Prot Y
Sylvain Poux SP Y
Suzi BBOP Y N

Annotation Propagation Rules

  • Chair: Alan Bridge and Paul Thomas
  • Email : alan.bridge -at- isb-sib.ch
  • This working group has no dedicated email list.


Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Paul Thomas Panther Y NA
Pascale Gaudet dictybase Y NA
Mike Livstone PPOD
Rachael Huntley GOA Y NA
Li Ni MGI Y NA
Serenella Ferro Rojas SP Y NA
Suzi BBOP Y N
Sylvain Poux SP Y
Silvia Braconi Quintaje SP Y
Ivo Pedruzzi SP Y
Catherine Rivoire SP Y
Elisabeth Coudert SP Y

Annotation of HTP data

Chair: Rama Balakrishnan

  • Email: rama -at- genome.stanford.edu
  • This working group has no dedicated email list.
Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Rama SGD
Manu Swiss-Prot Y
Silvia J. Swiss-Prot Y
Ruth BHF-UCL Y
Emily GOA N Y
Li Ni MGI Y
Susan T. FlyBase Y
Pascale Gaudet dictybase Y
Alan Bridge SP Y
Suzi BBOP Y N