Difference between revisions of "2010 GO camp working groups composition"

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[[Category:Workshops]]
 
==Use of regulation==
 
==Use of regulation==
 +
'''Chairs: Jane Lomax and Kimberly VanAuken'''
 +
* Email: jane -at- ebi.ac.uk
 +
* WG email: regulation@geneontology.org
 +
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/regulation
 
{| {{Prettytable}} class='sortable'
 
{| {{Prettytable}} class='sortable'
 
|-
 
|-
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| Kimberly
 
| Kimberly
 
| WB
 
| WB
 +
| Y
 +
| N
 +
|-
 +
|-
 +
| Varsha
 +
| BHF-UCL
 +
| Y
 +
| -
 +
|-
 +
| Ruth
 +
| BHF-UCL
 +
| Y
 +
| -
 +
|-
 +
| Jennifer
 +
| RGD
 
| ?
 
| ?
 
| ?
 
| ?
 
|-
 
|-
 +
| Jane
 +
| GO-EBI
 +
| Y
 +
| -
 +
|-
 +
| Tim
 +
| RGD
 +
| N
 +
| N
 
|-
 
|-
| Varsha
+
| David
| BHF-UCL
+
| MGI
 +
| N
 +
| N
 +
|-
 +
| Suzi
 +
| BBOP
 +
| Y
 +
| N
 +
|-
 +
| Lionel Breuza
 +
| SP
 
| Y
 
| Y
 
| -
 
| -
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==Downstream effects ==
 
==Downstream effects ==
 +
'''Chair: Rachael Huntley and Varsha Khodiyar'''
 +
* Email: huntley -at - ebi.ac.uk  --- v.khodiyar - at - ucl.ac.uk
 +
* WG email: downstream-effect -at- geneontology.org
 +
* Sign up to the WG: http://fafner.stanford.edu/mailman/listinfo/downstream-effect
 +
 +
 
{| {{Prettytable}} class='sortable'
 
{| {{Prettytable}} class='sortable'
 
|-
 
|-
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|N
 
|N
 
|If time zones permit
 
|If time zones permit
 +
|-
 +
|Li
 +
|MGI
 +
|Y
 +
|N
 
|-
 
|-
 
| Varsha
 
| Varsha
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| Y
 
| Y
 
| -
 
| -
 +
|-
 +
| Ruth
 +
| BHF-UCL
 +
| Y
 +
| -
 +
|-
 +
| Jennifer
 +
| RGD
 +
| ?
 +
| ?
 +
|-
 +
| Suzi
 +
| BBOP
 +
| Y
 +
| N
 +
|-
 +
| Sylvain
 +
| SIB
 +
| Y
 +
|
 +
|-
 +
| Ursula
 +
| SIB
 +
| Y
 +
|
 +
|-
 +
| Rama
 +
| SGD
 +
| Y
 +
|
 +
|-
 +
| Alex
 +
| MGI
 +
|
 +
|
 +
|-
 +
| Pascale
 +
| DictyBase
 +
| Y
 +
|
 +
|-
 +
| Serenella
 +
| SIB
 +
| Y
 +
|
 +
|-
 +
| Tim
 +
| RGD
 +
|
 +
|
 +
|-
 +
| Alan Ruttenberg
 +
| MIT
 +
|
 +
|
 
|-
 
|-
 
|}
 
|}
  
 
==Response to terms==
 
==Response to terms==
 +
'''Chair: Rebecca Foulger and Pascale Gaudet'''
 +
*  Email: rfoulger - at - ebi.ac.uk
 +
* There is no email list for this group
 +
 
{| {{Prettytable}} class='sortable'
 
{| {{Prettytable}} class='sortable'
 
|-
 
|-
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| Y
 
| Y
 
|
 
|
 +
|-
 +
| Ruth
 +
| BHF-UCL
 +
| Y
 +
| -
 +
|-
 +
| Jane
 +
| GO-EBI
 +
| Y
 +
|
 +
|-
 
|-
 
|-
 
|}
 
|}
  
 
==Binding documentation==
 
==Binding documentation==
 +
'''Chair: Ruth Lovering and Ursula Hinz '''
 +
* Email : r.lovering - at- ucl.ac.uk
 +
* WG email: binding - at - genome.stanford.edu
 +
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/binding
 +
 
{| {{Prettytable}} class='sortable'
 
{| {{Prettytable}} class='sortable'
 
|-
 
|-
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! Will be attending remotely Y/N
 
! Will be attending remotely Y/N
 
|-
 
|-
| Ruth
+
| Ruth  
| BHF-UC
+
| BHF-UCL
 
| Y
 
| Y
 
|  
 
|  
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|UniProt
 
|UniProt
 
|Y
 
|Y
|
+
|N
 +
|-
 +
|Tom
 +
|RGD
 +
|N
 +
|Y
 
|-
 
|-
 
|Emily  
 
|Emily  
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|   
 
|   
 
|-
 
|-
| Debby
+
| Debby Siegele
 
| EcoliWiki
 
| EcoliWiki
 +
| Y
 +
|
 +
|-
 +
| Shur-Jen
 +
| RGD
 
| N
 
| N
| Y- depending on when meeting time
+
| Y
 +
|-
 +
|Serenella Ferro Rojas
 +
|Swiss-Prot
 +
|Y
 +
|-
 +
|Elisabeth Coudert
 +
|Swiss-Prot
 +
|Y
 
|-
 
|-
 +
 
|}
 
|}
  
==Annotation of complexes==
+
==Annotation of protein complexes==
 +
'''Chair: Pascale Gaudet and  Bernd Roechert
 +
* Email: pgaudet -at- northwestern.edu
 +
* WG email: protein-complexes -at- geneontology.org.
 +
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/protein-complexes
  
 
{| {{Prettytable}} class='sortable'
 
{| {{Prettytable}} class='sortable'
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| Y
 
| Y
 
|-
 
|-
| Berndt Roechert
+
| Bernd Roechert
 
| Swiss-Prot
 
| Swiss-Prot
 +
|Y
 +
|-
 +
|-
 +
|Tom
 +
|RGD
 +
|N
 +
|Y
 +
|-
 +
|-
 +
|Silvia J.
 +
|Swiss-Prot
 +
|Y
 +
|-
 +
|Sylvain Poux
 +
| SP
 +
| Y
 
|
 
|
|
+
|-
 +
| Suzi
 +
| BBOP
 +
| Y
 +
| N
 +
|-
 +
|-
 
|}
 
|}
  
 
==Annotation Propagation Rules==
 
==Annotation Propagation Rules==
 +
* Chair: Alan Bridge and Paul Thomas
 +
* Email : alan.bridge -at- isb-sib.ch
 +
* This working group has no dedicated email list.
 +
 +
 
{| {{Prettytable}} class='sortable'
 
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|-
 
|-
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|  
 
|  
 
|-
 
|-
 +
| Rachael Huntley
 +
| GOA
 +
| Y
 +
| NA
 +
|-
 +
| Li Ni
 +
| MGI
 +
| Y
 +
| NA
 +
|-
 +
| Serenella Ferro Rojas
 +
| SP
 +
| Y
 +
| NA
 +
|-
 +
| Suzi
 +
| BBOP
 +
| Y
 +
| N
 +
|-
 +
|Sylvain Poux
 +
| SP
 +
| Y
 +
|
 +
|-
 +
| Silvia Braconi Quintaje
 +
| SP
 +
| Y
 +
|
 +
|-
 +
|Ivo Pedruzzi
 +
| SP
 +
| Y
 +
|
 +
|-
 +
|Catherine Rivoire
 +
| SP
 +
| Y
 +
|
 +
|-
 +
|Elisabeth Coudert
 +
| SP
 +
| Y
 
|}
 
|}
----
 
  
 
==Annotation of HTP data==
 
==Annotation of HTP data==
 +
'''Chair: Rama Balakrishnan'''
 +
* Email: rama -at- genome.stanford.edu
 +
* This working group has no dedicated email list.
 +
 
{| {{Prettytable}} class='sortable'
 
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|-
 
|-
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| Y
 
| Y
 
|
 
|
 +
|-
 +
| Silvia J.
 +
| Swiss-Prot
 +
| Y
 +
|
 +
|-
 +
| Ruth
 +
| BHF-UCL
 +
| Y
 +
|
 +
|-
 +
| Emily
 +
| GOA
 +
| N
 +
| Y
 +
|-
 +
| Li Ni
 +
| MGI
 +
| Y
 +
|
 +
|-
 +
|Susan T.
 +
| FlyBase
 +
| Y
 +
|
 +
|-
 +
|Pascale Gaudet
 +
| dictybase
 +
| Y
 +
|
 +
|-
 +
|Alan Bridge
 +
| SP
 +
| Y
 +
|
 +
|-
 +
| Suzi
 +
| BBOP
 +
| Y
 +
| N
 
|-
 
|-
 
|}
 
|}
 
----
 
----

Latest revision as of 08:48, 12 April 2019

Use of regulation

Chairs: Jane Lomax and Kimberly VanAuken

Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Fiona AgBase N Y
Rachael GOA Y N
Val GeneDB_Spombe  ?  ?
Yasmin GOA Y N
Kimberly WB Y N
Varsha BHF-UCL Y -
Ruth BHF-UCL Y -
Jennifer RGD  ?  ?
Jane GO-EBI Y -
Tim RGD N N
David MGI N N
Suzi BBOP Y N
Lionel Breuza SP Y -

Downstream effects

Chair: Rachael Huntley and Varsha Khodiyar


Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Fiona AgBase N Y
Rachael GOA Y N
Val GeneDB_Spombe  ?  ?
Yasmin GOA Y N
Ranjana WormBase N If time zones permit
Li MGI Y N
Varsha BHF-UCL Y -
Ruth BHF-UCL Y -
Jennifer RGD  ?  ?
Suzi BBOP Y N
Sylvain SIB Y
Ursula SIB Y
Rama SGD Y
Alex MGI
Pascale DictyBase Y
Serenella SIB Y
Tim RGD
Alan Ruttenberg MIT

Response to terms

Chair: Rebecca Foulger and Pascale Gaudet

  • Email: rfoulger - at - ebi.ac.uk
  • There is no email list for this group
Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Pascale dictyBase Y -
Stan RGD N Y
Susan FlyBase Y -
Rebecca UniProt Y -
Yasmin GOA Y N
Varsha BHF-UCL Y -
Li MGI Y N
Manu Swiss-Prot Y
Ruth BHF-UCL Y -
Jane GO-EBI Y

Binding documentation

Chair: Ruth Lovering and Ursula Hinz

Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Ruth BHF-UCL Y
Lakshmi AgBase N Y
Harold MGI N Y
Rebecca UniProt Y N
Tom RGD N Y
Emily GOA N Y
Ursula Hinz Swiss-Prot Y
Debby Siegele EcoliWiki Y
Shur-Jen RGD N Y
Serenella Ferro Rojas Swiss-Prot Y
Elisabeth Coudert Swiss-Prot Y

Annotation of protein complexes

Chair: Pascale Gaudet and Bernd Roechert

Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Pascale dictyBase Y -
Serenella Swiss-Prot Y -
Harold MGI N Y
Val GeneDB_Spombe  ?  ?
Emily GOA N Y
Bernd Roechert Swiss-Prot Y
Tom RGD N Y
Silvia J. Swiss-Prot Y
Sylvain Poux SP Y
Suzi BBOP Y N

Annotation Propagation Rules

  • Chair: Alan Bridge and Paul Thomas
  • Email : alan.bridge -at- isb-sib.ch
  • This working group has no dedicated email list.


Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Paul Thomas Panther Y NA
Pascale Gaudet dictybase Y NA
Mike Livstone PPOD
Rachael Huntley GOA Y NA
Li Ni MGI Y NA
Serenella Ferro Rojas SP Y NA
Suzi BBOP Y N
Sylvain Poux SP Y
Silvia Braconi Quintaje SP Y
Ivo Pedruzzi SP Y
Catherine Rivoire SP Y
Elisabeth Coudert SP Y

Annotation of HTP data

Chair: Rama Balakrishnan

  • Email: rama -at- genome.stanford.edu
  • This working group has no dedicated email list.
Name Group Will be present at the camp Y/N Will be attending remotely Y/N
Rama SGD
Manu Swiss-Prot Y
Silvia J. Swiss-Prot Y
Ruth BHF-UCL Y
Emily GOA N Y
Li Ni MGI Y
Susan T. FlyBase Y
Pascale Gaudet dictybase Y
Alan Bridge SP Y
Suzi BBOP Y N