2010 GO camp working groups composition: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
mNo edit summary |
||
(60 intermediate revisions by 20 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:Workshops - 2010 GO Annotation Camp]] | |||
==Use of regulation== | ==Use of regulation== | ||
'''Chairs: Jane Lomax and Kimberly VanAuken''' | |||
* Email: jane -at- ebi.ac.uk | |||
* WG email: regulation@geneontology.org | |||
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/regulation | |||
{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
|- | |- | ||
Line 30: | Line 35: | ||
| Kimberly | | Kimberly | ||
| WB | | WB | ||
| | | Y | ||
| | | N | ||
|- | |- | ||
|- | |- | ||
Line 64: | Line 69: | ||
| N | | N | ||
|- | |- | ||
| Suzi | |||
| BBOP | |||
| Y | |||
| N | |||
|- | |||
| Lionel Breuza | |||
| SP | |||
| Y | |||
| - | |||
|- | |||
|} | |} | ||
==Downstream effects == | ==Downstream effects == | ||
'''Chair: Rachael Huntley and Varsha Khodiyar''' | |||
* Email: huntley -at - ebi.ac.uk --- v.khodiyar - at - ucl.ac.uk | |||
* WG email: downstream-effect -at- geneontology.org | |||
* Sign up to the WG: http://fafner.stanford.edu/mailman/listinfo/downstream-effect | |||
{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
|- | |- | ||
Line 119: | Line 139: | ||
| ? | | ? | ||
| ? | | ? | ||
|- | |||
| Suzi | |||
| BBOP | |||
| Y | |||
| N | |||
|- | |||
| Sylvain | |||
| SIB | |||
| Y | |||
| | |||
|- | |||
| Ursula | |||
| SIB | |||
| Y | |||
| | |||
|- | |||
| Rama | |||
| SGD | |||
| Y | |||
| | |||
|- | |||
| Alex | |||
| MGI | |||
| | |||
| | |||
|- | |||
| Pascale | |||
| DictyBase | |||
| Y | |||
| | |||
|- | |||
| Serenella | |||
| SIB | |||
| Y | |||
| | |||
|- | |||
| Tim | |||
| RGD | |||
| | |||
| | |||
|- | |||
| Alan Ruttenberg | |||
| MIT | |||
| | |||
| | |||
|- | |- | ||
|} | |} | ||
==Response to terms== | ==Response to terms== | ||
'''Chair: Rebecca Foulger and Pascale Gaudet''' | |||
* Email: rfoulger - at - ebi.ac.uk | |||
* There is no email list for this group | |||
{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
|- | |- | ||
Line 179: | Line 248: | ||
| GO-EBI | | GO-EBI | ||
| Y | | Y | ||
| - | | | ||
|- | |||
|- | |- | ||
|} | |} | ||
==Binding documentation== | ==Binding documentation== | ||
'''Chair: Ruth Lovering and Ursula Hinz ''' | |||
* Email : r.lovering - at- ucl.ac.uk | |||
* WG email: binding - at - genome.stanford.edu | |||
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/binding | |||
{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
|- | |- | ||
Line 191: | Line 266: | ||
! Will be attending remotely Y/N | ! Will be attending remotely Y/N | ||
|- | |- | ||
| Ruth | | Ruth | ||
| BHF-UCL | | BHF-UCL | ||
| Y | | Y | ||
Line 226: | Line 301: | ||
| | | | ||
|- | |- | ||
| Debby | | Debby Siegele | ||
| EcoliWiki | | EcoliWiki | ||
| | | Y | ||
| | | | ||
|- | |- | ||
| Shur-Jen | | Shur-Jen | ||
Line 237: | Line 312: | ||
|- | |- | ||
|Serenella Ferro Rojas | |Serenella Ferro Rojas | ||
|Swiss-Prot | |||
|Y | |||
|- | |||
|Elisabeth Coudert | |||
|Swiss-Prot | |Swiss-Prot | ||
|Y | |Y | ||
Line 243: | Line 322: | ||
|} | |} | ||
==Annotation of complexes== | ==Annotation of protein complexes== | ||
'''Chair: Pascale Gaudet and Bernd Roechert | |||
* Email: pgaudet -at- northwestern.edu | |||
* WG email: protein-complexes -at- geneontology.org. | |||
* Sign up here: http://fafner.stanford.edu/mailman/listinfo/protein-complexes | |||
{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
Line 277: | Line 360: | ||
| Y | | Y | ||
|- | |- | ||
| | | Bernd Roechert | ||
| Swiss-Prot | | Swiss-Prot | ||
| | |Y | ||
| | |- | ||
|- | |- | ||
|Tom | |Tom | ||
Line 286: | Line 369: | ||
|N | |N | ||
|Y | |Y | ||
|- | |||
|- | |||
|Silvia J. | |||
|Swiss-Prot | |||
|Y | |||
|- | |||
|Sylvain Poux | |||
| SP | |||
| Y | |||
| | |||
|- | |||
| Suzi | |||
| BBOP | |||
| Y | |||
| N | |||
|- | |||
|- | |- | ||
|} | |} | ||
==Annotation Propagation Rules== | ==Annotation Propagation Rules== | ||
* Chair: Alan Bridge and Paul Thomas | |||
* Email : alan.bridge -at- isb-sib.ch | |||
* This working group has no dedicated email list. | |||
{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
|- | |- | ||
Line 321: | Line 426: | ||
| NA | | NA | ||
|- | |- | ||
| Serenella Ferro Rojas | |||
| SP | |||
| Y | |||
| NA | |||
|- | |||
| Suzi | |||
| BBOP | |||
| Y | |||
| N | |||
|- | |||
|Sylvain Poux | |||
| SP | |||
| Y | |||
| | |||
|- | |||
| Silvia Braconi Quintaje | |||
| SP | |||
| Y | |||
| | |||
|- | |||
|Ivo Pedruzzi | |||
| SP | |||
| Y | |||
| | |||
|- | |||
|Catherine Rivoire | |||
| SP | |||
| Y | |||
| | |||
|- | |||
|Elisabeth Coudert | |||
| SP | |||
| Y | |||
|} | |} | ||
==Annotation of HTP data== | ==Annotation of HTP data== | ||
'''Chair: Rama Balakrishnan''' | |||
* Email: rama -at- genome.stanford.edu | |||
* This working group has no dedicated email list. | |||
{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
|- | |- | ||
Line 344: | Line 486: | ||
| Y | | Y | ||
| | | | ||
|- | |||
| Ruth | |||
| BHF-UCL | |||
| Y | |||
| | |||
|- | |||
| Emily | |||
| GOA | |||
| N | |||
| Y | |||
|- | |||
| Li Ni | |||
| MGI | |||
| Y | |||
| | |||
|- | |||
|Susan T. | |||
| FlyBase | |||
| Y | |||
| | |||
|- | |||
|Pascale Gaudet | |||
| dictybase | |||
| Y | |||
| | |||
|- | |||
|Alan Bridge | |||
| SP | |||
| Y | |||
| | |||
|- | |||
| Suzi | |||
| BBOP | |||
| Y | |||
| N | |||
|- | |- | ||
|} | |} | ||
---- | ---- |
Latest revision as of 08:17, 22 February 2023
Use of regulation
Chairs: Jane Lomax and Kimberly VanAuken
- Email: jane -at- ebi.ac.uk
- WG email: regulation@geneontology.org
- Sign up here: http://fafner.stanford.edu/mailman/listinfo/regulation
Name | Group | Will be present at the camp Y/N | Will be attending remotely Y/N |
---|---|---|---|
Fiona | AgBase | N | Y |
Rachael | GOA | Y | N |
Val | GeneDB_Spombe | ? | ? |
Yasmin | GOA | Y | N |
Kimberly | WB | Y | N |
Varsha | BHF-UCL | Y | - |
Ruth | BHF-UCL | Y | - |
Jennifer | RGD | ? | ? |
Jane | GO-EBI | Y | - |
Tim | RGD | N | N |
David | MGI | N | N |
Suzi | BBOP | Y | N |
Lionel Breuza | SP | Y | - |
Downstream effects
Chair: Rachael Huntley and Varsha Khodiyar
- Email: huntley -at - ebi.ac.uk --- v.khodiyar - at - ucl.ac.uk
- WG email: downstream-effect -at- geneontology.org
- Sign up to the WG: http://fafner.stanford.edu/mailman/listinfo/downstream-effect
Name | Group | Will be present at the camp Y/N | Will be attending remotely Y/N |
---|---|---|---|
Fiona | AgBase | N | Y |
Rachael | GOA | Y | N |
Val | GeneDB_Spombe | ? | ? |
Yasmin | GOA | Y | N |
Ranjana | WormBase | N | If time zones permit |
Li | MGI | Y | N |
Varsha | BHF-UCL | Y | - |
Ruth | BHF-UCL | Y | - |
Jennifer | RGD | ? | ? |
Suzi | BBOP | Y | N |
Sylvain | SIB | Y | |
Ursula | SIB | Y | |
Rama | SGD | Y | |
Alex | MGI | ||
Pascale | DictyBase | Y | |
Serenella | SIB | Y | |
Tim | RGD | ||
Alan Ruttenberg | MIT |
Response to terms
Chair: Rebecca Foulger and Pascale Gaudet
- Email: rfoulger - at - ebi.ac.uk
- There is no email list for this group
Name | Group | Will be present at the camp Y/N | Will be attending remotely Y/N |
---|---|---|---|
Pascale | dictyBase | Y | - |
Stan | RGD | N | Y |
Susan | FlyBase | Y | - |
Rebecca | UniProt | Y | - |
Yasmin | GOA | Y | N |
Varsha | BHF-UCL | Y | - |
Li | MGI | Y | N |
Manu | Swiss-Prot | Y | |
Ruth | BHF-UCL | Y | - |
Jane | GO-EBI | Y |
Binding documentation
Chair: Ruth Lovering and Ursula Hinz
- Email : r.lovering - at- ucl.ac.uk
- WG email: binding - at - genome.stanford.edu
- Sign up here: http://fafner.stanford.edu/mailman/listinfo/binding
Name | Group | Will be present at the camp Y/N | Will be attending remotely Y/N |
---|---|---|---|
Ruth | BHF-UCL | Y | |
Lakshmi | AgBase | N | Y |
Harold | MGI | N | Y |
Rebecca | UniProt | Y | N |
Tom | RGD | N | Y |
Emily | GOA | N | Y |
Ursula Hinz | Swiss-Prot | Y | |
Debby Siegele | EcoliWiki | Y | |
Shur-Jen | RGD | N | Y |
Serenella Ferro Rojas | Swiss-Prot | Y | |
Elisabeth Coudert | Swiss-Prot | Y |
Annotation of protein complexes
Chair: Pascale Gaudet and Bernd Roechert
- Email: pgaudet -at- northwestern.edu
- WG email: protein-complexes -at- geneontology.org.
- Sign up here: http://fafner.stanford.edu/mailman/listinfo/protein-complexes
Name | Group | Will be present at the camp Y/N | Will be attending remotely Y/N |
---|---|---|---|
Pascale | dictyBase | Y | - |
Serenella | Swiss-Prot | Y | - |
Harold | MGI | N | Y |
Val | GeneDB_Spombe | ? | ? |
Emily | GOA | N | Y |
Bernd Roechert | Swiss-Prot | Y | |
Tom | RGD | N | Y |
Silvia J. | Swiss-Prot | Y | |
Sylvain Poux | SP | Y | |
Suzi | BBOP | Y | N |
Annotation Propagation Rules
- Chair: Alan Bridge and Paul Thomas
- Email : alan.bridge -at- isb-sib.ch
- This working group has no dedicated email list.
Name | Group | Will be present at the camp Y/N | Will be attending remotely Y/N |
---|---|---|---|
Paul Thomas | Panther | Y | NA |
Pascale Gaudet | dictybase | Y | NA |
Mike Livstone | PPOD | ||
Rachael Huntley | GOA | Y | NA |
Li Ni | MGI | Y | NA |
Serenella Ferro Rojas | SP | Y | NA |
Suzi | BBOP | Y | N |
Sylvain Poux | SP | Y | |
Silvia Braconi Quintaje | SP | Y | |
Ivo Pedruzzi | SP | Y | |
Catherine Rivoire | SP | Y | |
Elisabeth Coudert | SP | Y |
Annotation of HTP data
Chair: Rama Balakrishnan
- Email: rama -at- genome.stanford.edu
- This working group has no dedicated email list.
Name | Group | Will be present at the camp Y/N | Will be attending remotely Y/N |
---|---|---|---|
Rama | SGD | ||
Manu | Swiss-Prot | Y | |
Silvia J. | Swiss-Prot | Y | |
Ruth | BHF-UCL | Y | |
Emily | GOA | N | Y |
Li Ni | MGI | Y | |
Susan T. | FlyBase | Y | |
Pascale Gaudet | dictybase | Y | |
Alan Bridge | SP | Y | |
Suzi | BBOP | Y | N |