2010 Timeline: Difference between revisions
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| Identify GO terms for cleaning up | | Identify GO terms for cleaning up | ||
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| | | Aim to have most dodgy terms clean | ||
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Revision as of 11:24, 9 September 2010
Project | Personel | January | February | March | April | May | June | July | August | September | October | November | December |
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Chemical terms in GO | Harold, David, Tanya, Jane, Chris | Meet in Hinxton to plan out strategy (DONE) | Manually Curate GO implicit ontology (GOCHE)(DONE) | Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days) | Implement GOCHE in GO | Submit paper about aligning chemical representations in 2 ontologies | |||||||
Internal Cross Products | David, Tanya, Jane, Chris | BPxBP regulates set committed (DONE) | CCxCC (part_of only set committed)(DONE) | BPxBP (part_of only set committed) | |||||||||
Function-Process Links | David, Tanya, Amelia | Transporter activity- transport (DONE) | |||||||||||
Generic GO slim Overhaul | Jane, Val | First revision (DONE) | testing | Final release | Write paper | ||||||||
Taxon Checks | Jane, Jen,Chris | First version of file (DONE) | Paper written (DONE) | ||||||||||
Virus-related term overhaul | Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others | Draft terms finished (DONE) | Terms integrated in to main ontology | Virus annotation guidelines written | Paper written | ||||||||
Signaling overhaul | Jen, Becky, Alex, Sandra, Peter, Ruth and others | New high-level structure (DONE) | Clean-up of lower level terms | Rehousing regulation of signaling terms (DONE) | New Wnt signaling terms for RefGenome proj | Connect cell surface receptors and intracellular signaling casettes | Check involved in/by/via terms in signaling node | ||||||
Transcription & transcription factor activity overhaul | David, Karen | Preliminary analysis (DONE) | Karen attends transcription meeting in Spain (DONE) | Ontology revisions | |||||||||
Kidney Development | David, Doug, Becky, Yasmin and community experts | Meeting with experts (DONE) | Generic kidney terms in GO (DONE) | metanephros terms (DONE) | pronephros terms (DONE) | mesonephros terms (DONE) | fly renal terms | ||||||
PAMGO collaboration | Jane, PAMGO | ongoing | Added 50 new terms | ||||||||||
GO reasoner-based quality control | David, Tanya, Chris | Abduced links reports (ongoing) | Automated QC on regulates terms (implemented) | Automated QC on CCxCC cross-products (implemented) | Automated QC on BPxBP cross-products | ||||||||
SF tracker items | Everyone, Jane coordinates | ||||||||||||
Cognition and Sensory perception | David, community experts | Initial meetings with experts from The Jackson Laboratory (DONE) | Meeting with MGI phenotype group to coordinate effort (DONE) | ||||||||||
Protein complexes in GO | Harold | ||||||||||||
Neurological processes and components | Jane, Chris and TBD | ||||||||||||
Enzyme Alignment: improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes | Amelia, Chris, David, Jane, Tanya | First parse/pass of GO reactions; remove obvious errors | Identify GO terms for cleaning up | Aim to have most dodgy terms clean |