2010 Timeline: Difference between revisions

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[[Category:Timelines]]
[[2011_Timeline]]
<br>
{|border="1" cell spacing="0" cellpadding="5" align="center"
{|border="1" cell spacing="0" cellpadding="5" align="center"
!Project
!Project
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|Manually Curate GO implicit ontology (GOCHE)<font color ="red">(DONE)
|Manually Curate GO implicit ontology (GOCHE)<font color ="red">(DONE)
|Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days)
|Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days)
|Implement GOCHE in GO
|Submit paper about aligning chemical representations in 2 ontologies
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|First draft of paper <font color ="red">(DONE)
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|Request new terms needed from ChEBI
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|[[Cross_Product_Guide|Internal Cross Products]]
|[[Cross_Product_Guide|Internal Cross Products]]
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|CCxCC (part_of only set committed)<font color ="red">(DONE)
|CCxCC (part_of only set committed)<font color ="red">(DONE)
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|BPxBP (part_of only set committed)
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|BPxBP (part_of only set committed)<font color ="red">(DONE)
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|[[Function-Process Links]]
|[[Function-Process Links]]
|David, Tanya
|David, Tanya, Amelia
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|Transporter activity- transport <font color ="red">(DONE)
|Transporter activity- transport <font color ="red">(DONE)
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|Transcription (David & Karen)
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|Catalytic activity-metabolic process
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|[[GO slim overhaul|Generic GO slim Overhaul]]
|[[GO slim overhaul|Generic GO slim Overhaul]]
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|First revision <font color ="red">(DONE)
|First revision <font color ="red">(DONE)
|testing
|Final release
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|IMG mapping
|needs personnel
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|testing
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|Final release
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|Write paper
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| First version of file <font color ="red">(DONE)
| First version of file <font color ="red">(DONE)
|ongoing project...
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|Paper written <font color ="red">(DONE)
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|Draft terms finished <font color ="red">(DONE)
|Draft terms finished <font color ="red">(DONE)
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|Terms integrated in to main ontology
|Terms integrated in to main ontology
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|Paper written
|Paper written
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|[[Signaling |Signaling overhaul]]
|[[Signaling |Signaling overhaul]]
|Becky, Alex, Sandra, Peter, Ruth and others
|Jen, Becky, Alex, Sandra, Peter, Ruth and others
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|New high-level structure <font color ="red">(DONE)
|New high-level structure <font color ="red">(DONE)
|Clean-up of lower level terms
|Clean-up of lower level terms
|Rehousing regulation of signaling terms <font color ="red">(DONE)
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|New Wnt signaling terms for RefGenome proj
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|Connect cell surface receptors and intracellular signaling casettes
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|Check involved in/by/via terms in signaling node
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|Generic kidney terms in GO <font color ="red">(DONE)
|Generic kidney terms in GO <font color ="red">(DONE)
|metanephros terms <font color ="red">(DONE)
|metanephros terms <font color ="red">(DONE)
|pronephros terms
|pronephros terms <font color ="red">(DONE)
|mesonephros terms
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|fly renal terms
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|submit paper
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|mesonephros terms <font color ="red">(DONE)
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|fly renal terms <font color ="red">(DONE)
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|PAMGO collaboration
|PAMGO collaboration
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|Added 50 new terms
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|[[Ontology_Quality_Control|GO reasoner-based quality control]]
|[[Ontology_Quality_Control|GO reasoner-based quality control]]
|David, Tanya, Chris
|David, Tanya, Chris
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|Abduced links reports (ongoing)
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|Automated QC on regulates terms <font color ="red">(implemented)
|Automated QC on regulates terms <font color ="red">(implemented)
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|Automated QC on CCxCC cross-products <font color ="red">(implemented)
|Automated QC on CCxCC cross-products <font color ="red">(implemented)
|Automated QC on BPxBP cross-products
|Abduced links reports
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|Automated QC on BPxBP cross-products <font color ="red">(implemented)
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|[[Cognition and Sensory perception]]
|[[Cognition and Sensory perception]]
|David, Tanya, community experts
|David, community experts
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|Initial meetings with experts from The Jackson Laboratory <font color ="red">(DONE)
|Initial meetings with experts from The Jackson Laboratory <font color ="red">(DONE)
|Meeting with MGI phenotype group to coordinate effort
|Meeting with MGI phenotype group to coordinate effort <font color ="red">(DONE)
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|[[Neurobiology Project|Neurological processes and components]]
|Jane, Chris and TBD
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|[[Enzyme Alignment]]: improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes
|Amelia, Chris, David, Jane, Tanya
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| First parse/pass of GO reactions; remove obvious errors
| Identify GO terms for cleaning up
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| Aim to have most dodgy terms clean
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Revision as of 18:16, 7 April 2014

2011_Timeline

Project Personel January February March April May June July August September October November December
Chemical terms in GO Harold, David, Tanya, Jane, Chris Meet in Hinxton to plan out strategy (DONE) Manually Curate GO implicit ontology (GOCHE)(DONE) Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days) First draft of paper (DONE) Request new terms needed from ChEBI
Internal Cross Products David, Tanya, Jane, Chris BPxBP regulates set committed (DONE) CCxCC (part_of only set committed)(DONE) BPxBP (part_of only set committed)(DONE)
Function-Process Links David, Tanya, Amelia Transporter activity- transport (DONE)
Generic GO slim Overhaul Jane, Val First revision (DONE) testing Final release Write paper
Taxon Checks Jane, Jen,Chris First version of file (DONE) Paper written (DONE)
Virus-related term overhaul Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others Draft terms finished (DONE) Terms integrated in to main ontology Virus annotation guidelines written Paper written
Signaling overhaul Jen, Becky, Alex, Sandra, Peter, Ruth and others New high-level structure (DONE) Clean-up of lower level terms Rehousing regulation of signaling terms (DONE) New Wnt signaling terms for RefGenome proj Connect cell surface receptors and intracellular signaling casettes Check involved in/by/via terms in signaling node
Transcription & transcription factor activity overhaul David, Karen Preliminary analysis (DONE) Karen attends transcription meeting in Spain (DONE) Ontology revisions
Kidney Development David, Doug, Becky, Yasmin and community experts Meeting with experts (DONE) Generic kidney terms in GO (DONE) metanephros terms (DONE) pronephros terms (DONE) mesonephros terms (DONE) fly renal terms (DONE)
PAMGO collaboration Jane, PAMGO ongoing Added 50 new terms
GO reasoner-based quality control David, Tanya, Chris Abduced links reports (ongoing) Automated QC on regulates terms (implemented) Automated QC on CCxCC cross-products (implemented) Automated QC on BPxBP cross-products (implemented)
SF tracker items Everyone, Jane coordinates
Cognition and Sensory perception David, community experts Initial meetings with experts from The Jackson Laboratory (DONE) Meeting with MGI phenotype group to coordinate effort (DONE)
Protein complexes in GO Harold
Neurological processes and components Jane, Chris and TBD
Enzyme Alignment: improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes Amelia, Chris, David, Jane, Tanya First parse/pass of GO reactions; remove obvious errors Identify GO terms for cleaning up Aim to have most dodgy terms clean