Project
|
Personel
|
January
|
February
|
March
|
April
|
May
|
June
|
July
|
August
|
September
|
October
|
November
|
December
|
Chemical terms in GO
|
Harold, David, Tanya, Jane, Chris
|
|
|
Meet in Hinxton to plan out strategy (DONE)
|
|
|
Manually Curate GO implicit ontology (GOCHE)(DONE)
|
Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days)
|
|
|
First draft of paper (DONE)
|
|
Request new terms needed from ChEBI
|
Internal Cross Products
|
David, Tanya, Jane, Chris
|
BPxBP regulates set committed (DONE)
|
|
|
|
CCxCC (part_of only set committed)(DONE)
|
|
|
|
|
BPxBP (part_of only set committed)(DONE)
|
|
|
Function-Process Links
|
David, Tanya, Amelia
|
|
|
|
|
Transporter activity- transport (DONE)
|
|
|
|
|
|
|
|
Generic GO slim Overhaul
|
Jane, Val
|
|
|
First revision (DONE)
|
|
|
|
testing
|
|
Final release
|
|
Write paper
|
|
Taxon Checks
|
Jane, Jen,Chris
|
|
First version of file (DONE)
|
|
|
|
Paper written (DONE)
|
|
|
|
|
|
|
Virus-related term overhaul
|
Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others
|
|
|
|
|
Draft terms finished (DONE)
|
|
|
|
Terms integrated in to main ontology
|
Virus annotation guidelines written
|
|
Paper written
|
Signaling overhaul
|
Jen, Becky, Alex, Sandra, Peter, Ruth and others
|
|
New high-level structure (DONE)
|
Clean-up of lower level terms
|
Rehousing regulation of signaling terms (DONE)
|
|
|
|
New Wnt signaling terms for RefGenome proj
|
Connect cell surface receptors and intracellular signaling casettes
|
Check involved in/by/via terms in signaling node
|
|
|
Transcription & transcription factor activity overhaul
|
David, Karen
|
|
|
|
|
Preliminary analysis (DONE)
|
Karen attends transcription meeting in Spain (DONE)
|
Ontology revisions
|
|
|
|
|
|
Kidney Development
|
David, Doug, Becky, Yasmin and community experts
|
Meeting with experts (DONE)
|
|
Generic kidney terms in GO (DONE)
|
metanephros terms (DONE)
|
pronephros terms (DONE)
|
|
|
|
mesonephros terms (DONE)
|
|
|
fly renal terms (DONE)
|
PAMGO collaboration
|
Jane, PAMGO
|
ongoing
|
|
|
|
|
|
|
Added 50 new terms
|
|
|
|
|
GO reasoner-based quality control
|
David, Tanya, Chris
|
Abduced links reports (ongoing)
|
|
Automated QC on regulates terms (implemented)
|
|
|
Automated QC on CCxCC cross-products (implemented)
|
|
|
|
Automated QC on BPxBP cross-products (implemented)
|
|
|
SF tracker items
|
Everyone, Jane coordinates
|
|
|
|
|
|
|
|
|
|
|
|
|
Cognition and Sensory perception
|
David, community experts
|
|
|
|
|
Initial meetings with experts from The Jackson Laboratory (DONE)
|
Meeting with MGI phenotype group to coordinate effort (DONE)
|
|
|
|
|
|
|
Protein complexes in GO
|
Harold
|
|
|
|
|
|
|
|
|
|
|
|
|
Neurological processes and components
|
Jane, Chris and TBD
|
|
|
|
|
|
|
|
|
|
|
|
|
Enzyme Alignment: improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes
|
Amelia, Chris, David, Jane, Tanya
|
|
|
|
|
|
|
|
|
First parse/pass of GO reactions; remove obvious errors
|
Identify GO terms for cleaning up
|
|
Aim to have most dodgy terms clean
|