Difference between revisions of "2011 Timeline (Archived)"

From GO Wiki
Jump to: navigation, search
(Created page with '{|border="1" cell spacing="0" cellpadding="5" align="center" !Project !Personel !January !February !March !April !May !June !July !August !September !October !November !December…')
 
Line 17: Line 17:
 
|[[Chemical terms in GO]]
 
|[[Chemical terms in GO]]
 
|Harold, David, Tanya, Jane, Chris
 
|Harold, David, Tanya, Jane, Chris
 +
|Begin mining definitions of MF terms to make cross-products for reactants and substrates
 +
|
 +
|Commit the enzyme def cross-products
 +
|
 +
|
 
|
 
|
 
|
 
|
|Meet in Hinxton to plan out strategy <font color ="red">(DONE)
 
 
|
 
|
 
|
 
|
|Manually Curate GO implicit ontology (GOCHE)<font color ="red">(DONE)
 
|Meet in CA to refine GOCHE, Align GOCHE with CHEBI (4 days)
 
|Implement GOCHE in GO
 
|Submit paper about aligning chemical representations in 2 ontologies
 
 
|
 
|
 
|
 
|
Line 32: Line 32:
 
|[[Cross_Product_Guide|Internal Cross Products]]
 
|[[Cross_Product_Guide|Internal Cross Products]]
 
|David, Tanya, Jane, Chris
 
|David, Tanya, Jane, Chris
|BPxBP regulates set committed <font color ="red">(DONE)
+
|BP-MF has_part relationships
 
|
 
|
 
|
 
|
 
|
 
|
|CCxCC (part_of only set committed)<font color ="red">(DONE)
 
|
 
|BPxBP (part_of only set committed)
 
 
|
 
|
 +
|BP-BP multi-organism processes
 
|
 
|
 
|
 
|
 
|
 
|
 +
|CC-GO a certain complex is capable_of
 +
|MF-CC results_in
 
|
 
|
 
|-
 
|-
Line 48: Line 48:
 
|David, Tanya
 
|David, Tanya
 
|
 
|
 +
|Finish off enzymes
 
|
 
|
|
+
|Begin metabolic pathways
|
 
|Transporter activity- transport <font color ="red">(DONE)
 
|
 
|Transcription (David & Karen)
 
|
 
|
 
|
 
|
 
|Catalytic activity-metabolic process
 
|-
 
|[[GO slim overhaul|Generic GO slim Overhaul]]
 
|Jane, Val
 
|
 
|
 
|First revision <font color ="red">(DONE)
 
|
 
|
 
|
 
|testing
 
|
 
|Final release
 
|
 
|
 
|
 
|-
 
|IMG mapping
 
|needs personnel
 
|
 
|
 
|
 
|
 
 
|
 
|
 
|
 
|
Line 87: Line 57:
 
|
 
|
 
|
 
|
|
 
|
 
|-
 
|Taxon Checks
 
|Jane, Jen,Chris
 
|
 
| First version of file <font color ="red">(DONE)
 
|
 
|
 
|
 
|Paper written <font color ="red">(DONE)
 
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|[[Virus terms|Virus-related term overhaul]]
 
|Michelle, Jane, Candace, Ariane Toussaint, Brenley, Alex & others
 
|
 
|
 
|
 
|
 
|Draft terms finished <font color ="red">(DONE)
 
|
 
|Terms integrated in to main ontology
 
|Virus annotation guidelines written
 
|
 
|Paper written
 
 
|
 
|
 
|
 
|
Line 123: Line 63:
 
|Becky, Alex, Sandra, Peter, Ruth and others
 
|Becky, Alex, Sandra, Peter, Ruth and others
 
|
 
|
|New high-level structure <font color ="red">(DONE)
 
|Clean-up of lower level terms
 
 
|
 
|
 
|
 
|
Line 131: Line 69:
 
|
 
|
 
|
 
|
|
 
|
 
|
 
|-
 
|[[Transcription |Transcription & transcription factor activity overhaul]]
 
|David, Karen
 
|
 
|
 
|
 
|
 
|Preliminary analysis <font color ="red">(DONE)
 
|Karen attends transcription meeting in Spain <font color ="red">(DONE)
 
|Ontology revisions
 
 
|
 
|
 
|
 
|
|
 
|
 
|
 
|-
 
|[[Kidney Development]]
 
|David, Doug, Becky, Yasmin and community experts
 
|Meeting with experts <font color ="red">(DONE)
 
|
 
|Generic kidney terms in GO <font color ="red">(DONE)
 
|metanephros terms <font color ="red">(DONE)
 
|pronephros terms <font color ="red">(DONE)
 
|mesonephros terms
 
|fly renal terms
 
|
 
|submit paper
 
 
|
 
|
 
|
 
|
Line 203: Line 113:
 
|
 
|
 
|
 
|
|
 
|
 
|
 
|
 
|
 
|
 
|-
 
|[[Cognition and Sensory perception]]
 
|David, Tanya, community experts
 
|
 
|
 
|
 
|
 
|Initial meetings with experts from The Jackson Laboratory <font color ="red">(DONE)
 
|Meeting with MGI phenotype group to coordinate effort
 
 
|
 
|
 
|
 
|

Revision as of 05:20, 5 August 2010

Project Personel January February March April May June July August September October November December
Chemical terms in GO Harold, David, Tanya, Jane, Chris Begin mining definitions of MF terms to make cross-products for reactants and substrates Commit the enzyme def cross-products
Internal Cross Products David, Tanya, Jane, Chris BP-MF has_part relationships BP-BP multi-organism processes CC-GO a certain complex is capable_of MF-CC results_in
Function-Process Links David, Tanya Finish off enzymes Begin metabolic pathways
Signaling overhaul Becky, Alex, Sandra, Peter, Ruth and others
PAMGO collaboration Jane, PAMGO ongoing
GO reasoner-based quality control David, Tanya, Chris Automated QC on regulates terms (implemented) Automated QC on CCxCC cross-products (implemented) Automated QC on BPxBP cross-products Abduced links reports
SF tracker items Everyone, Jane coordinates
Protein complexes in GO Harold
Neurological processes TBD