Difference between revisions of "2011 Timeline (Archived)"

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[[2010_Timeline]]
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[[Category:Timelines]] [[Category:Archived]]
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*[[2010_Timeline]]
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*[[2012_Timeline]]
 
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!December
 
!December
 
|-
 
|-
|[[Chemical terms in GO]]
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|[[Chemical terms in GO]]. Phase I: metabolism, binding, transport
 
|Harold, David, Tanya, Jane, Chris
 
|Harold, David, Tanya, Jane, Chris
|Begin mining definitions of MF terms to make cross-products for reactants and substrates
 
 
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|Commit the enzyme def cross-products
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|All GOCHE terms in CHEBI <font color ="red">(DONE)
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|GOCHE checked and correct <font color ="red">(DONE)
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|Meet with CHEBI in London - submit paper
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|-
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|[[Chemical terms in GO]]. Phase II: improve enzyme functions, align with external databases inc. Rhea, MF-BP links for enzymes/metabolic processes
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|Amelia, Chris, David, Jane, Tanya, Becky, Paola
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|[[Cross_Product_Guide|Internal Cross Products]]
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|Cell ontology cross-products
|David, Tanya, Jane, Chris
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|Paola, Chris, Jane, Alex
|BPxCC occurs_in only
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|CCxCC - other relationships
 
 
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|BPxBP multi-organism processes
 
 
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|MFxCC unfolds_in/results_in_binding_of
 
 
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|[[Function-Process Links]]
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|[[Cross_Product_Guide|Internal Cross Products]]
|Amelia, David, Tanya
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|David, Tanya, Jane, Chris, Paola, Becky
 
|
 
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|Finish off enzymes
 
 
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|Begin metabolic pathways
 
 
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|BPxCC occurs_in only <font color ="red">(DONE)
 
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|MFxCC?
 
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|[[Signaling |Signaling overhaul]]
 
|[[Signaling |Signaling overhaul]]
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|define FUNCTION signaling molecule terms
 
|define FUNCTION signaling molecule terms
 
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|Redefine receptor terms and standardise parentage/children
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|Redefine receptor terms and standardise parentage/children <font color ="red">(DONE)
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|Adding ligand binding HAS_PART relationships to receptors
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|Cleaning up receptors that aren't functions
 
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|PAMGO collaboration
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|[[Kidney Development]]
|Jane, PAMGO
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|David, Doug, Becky, Yasmin and community experts
|ongoing
 
 
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|Paper submitted <font color ="red">(DONE)
 
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|[[Ontology_Quality_Control|GO reasoner-based quality control]]
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|Protein complexes in GO
|David, Tanya, Chris
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|Harold
|Abduced links reports (ongoing)
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|SF tracker items
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|[[Neurobiology Project|Neurological processes and components]]
|Everyone, Jane coordinates
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|Jane, Chris, David and Paola
 
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|Added/rearranged some synapse-related GO terms
 
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|[[Transcription]] overhaul
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|David, Karen
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|Term Additions <font color ="red">(DONE)
 
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|Term Obsoletions <font color ="red">(DONE)
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|<font color ="red">(DONE). <font color ="black">Some ongoing improvments
 
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|Protein complexes in GO
 
|Harold
 
 
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|Cardiac Conduction Ontology Development
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|Ruth, Stan, Doug, David, Tanya, Becky, Paola and community experts
 
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|[[Neurobiology Project|Neurological processes and components]]
 
|TBD
 
 
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|Content meeting at UCL
 
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|Apoptosis
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|Emily, Becky, Paola, Pablo and community experts
 
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|Interest meeting with experts @ EBI
 
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|Collect feedback from experts at APO-SYS meeting
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|Revisiting caspase-related terms (phase I) <font color ="red">(DONE)
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|Revisiting top-level terms and existing annotations <font color ="red">(IN PROGRESS)
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|Revisiting caspase-related terms (phase II) and existing annotations
 
|-
 
|-
|Protein vs peptidyl vs protein amino acid modification
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|[[Virus_terms|Viral processes]]
|Becky and others
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|Jane, Philippe Le Mercier (SIB) and community experts
|Connect up, and define, peptidyl vs protein vs protein AA terms
 
 
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|Terms integrated in to live GO

Latest revision as of 06:26, 8 April 2019


Project Personel January February March April May June July August September October November December
Chemical terms in GO. Phase I: metabolism, binding, transport Harold, David, Tanya, Jane, Chris All GOCHE terms in CHEBI (DONE) GOCHE checked and correct (DONE) Meet with CHEBI in London - submit paper
Chemical terms in GO. Phase II: improve enzyme functions, align with external databases inc. Rhea, MF-BP links for enzymes/metabolic processes Amelia, Chris, David, Jane, Tanya, Becky, Paola
Cell ontology cross-products Paola, Chris, Jane, Alex
Internal Cross Products David, Tanya, Jane, Chris, Paola, Becky BPxCC occurs_in only (DONE) MFxCC?
Signaling overhaul Jen, Becky, Alex, Sandra, Peter, Ruth and others define FUNCTION signaling molecule terms Redefine receptor terms and standardise parentage/children (DONE) Adding ligand binding HAS_PART relationships to receptors Cleaning up receptors that aren't functions
Kidney Development David, Doug, Becky, Yasmin and community experts Paper submitted (DONE)
Protein complexes in GO Harold
Neurological processes and components Jane, Chris, David and Paola Added/rearranged some synapse-related GO terms
Transcription overhaul David, Karen Term Additions (DONE) Term Obsoletions (DONE) (DONE). Some ongoing improvments
Cardiac Conduction Ontology Development Ruth, Stan, Doug, David, Tanya, Becky, Paola and community experts Content meeting at UCL
Apoptosis Emily, Becky, Paola, Pablo and community experts Interest meeting with experts @ EBI Collect feedback from experts at APO-SYS meeting Revisiting caspase-related terms (phase I) (DONE) Revisiting top-level terms and existing annotations (IN PROGRESS) Revisiting caspase-related terms (phase II) and existing annotations
Viral processes Jane, Philippe Le Mercier (SIB) and community experts Terms integrated in to live GO