Difference between revisions of "2011 Timeline (Archived)"

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[[2010_Timeline]]
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[[Category:Timelines]] [[Category:Archived]]
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*[[2010_Timeline]]
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*[[2012_Timeline]]
 
<br>
 
<br>
  
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!December
 
!December
 
|-
 
|-
|[[Chemical terms in GO]]
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|[[Chemical terms in GO]]. Phase I: metabolism, binding, transport
 
|Harold, David, Tanya, Jane, Chris
 
|Harold, David, Tanya, Jane, Chris
 
|
 
|
|Meet in Boston to implement term name cross products/ submit paper
 
 
|
 
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|Begin QC on misalignments between GO and CHEBI
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|All GOCHE terms in CHEBI <font color ="red">(DONE)
 
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|Begin mining definitions of MF terms to make cross-products for reactants and substrates
 
 
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|Commit the enzyme def cross-products
 
 
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|GOCHE checked and correct <font color ="red">(DONE)
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|Meet with CHEBI in London - submit paper
 
|
 
|
 
|-
 
|-
|Cell ontology cross-products
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|[[Chemical terms in GO]]. Phase II: improve enzyme functions, align with external databases inc. Rhea, MF-BP links for enzymes/metabolic processes
|TBD
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|Amelia, Chris, David, Jane, Tanya, Becky, Paola
 
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|
 
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|
 
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|-
 
|-
|[[Cross_Product_Guide|Internal Cross Products]]
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|Cell ontology cross-products
|David, Tanya, Jane, Chris
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|Paola, Chris, Jane, Alex
|BPxCC occurs_in only [DONE]
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 +
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 +
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|CCxCC - other relationships
 
 
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|BPxBP multi-organism processes
 
 
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|MFxCC unfolds_in/results_in_binding_of
 
 
|-
 
|-
|[[Function-Process Links]]
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|[[Cross_Product_Guide|Internal Cross Products]]
|All
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|David, Tanya, Jane, Chris, Paola, Becky
|ongoing
 
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|BPxCC occurs_in only <font color ="red">(DONE)
 
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|MFxCC?
 
|-
 
|-
 
|[[Signaling |Signaling overhaul]]
 
|[[Signaling |Signaling overhaul]]
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|define FUNCTION signaling molecule terms
 
|define FUNCTION signaling molecule terms
 
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|Redefine receptor terms and standardise parentage/children [DONE]
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|Redefine receptor terms and standardise parentage/children <font color ="red">(DONE)
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|
 
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|Adding ligand binding HAS_PART relationships to receptors
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|Cleaning up receptors that aren't functions
 
|
 
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|-
 
|-
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|David, Doug, Becky, Yasmin and community experts
 
|David, Doug, Becky, Yasmin and community experts
 
|
 
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|Write paper
 
|
 
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|PAMGO collaboration
 
|Jane, PAMGO
 
|ongoing
 
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|[[Ontology_Quality_Control|GO reasoner-based quality control]]
 
|David, Tanya, Chris
 
|Abduced links reports (ongoing)
 
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|SF tracker items
 
|Everyone, Jane coordinates
 
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|Paper submitted <font color ="red">(DONE)
 
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|-
 
|-
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|-
 
|-
 
|[[Neurobiology Project|Neurological processes and components]]
 
|[[Neurobiology Project|Neurological processes and components]]
|Jane, Chris, David and TBD
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|Jane, Chris, David and Paola
 
|
 
|
 
|  
 
|  
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|Added/rearranged some synapse-related GO terms
 
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|-
 
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|Protein vs peptidyl vs protein amino acid modification
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|[[Transcription]] overhaul
|Becky and others
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|David, Karen
|Connect up, and define, peptidyl vs protein vs protein AA terms
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|Term Additions <font color ="red">(DONE)
|
 
 
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||
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|Term Obsoletions <font color ="red">(DONE)
 
|
 
|
 
|
 
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 +
|<font color ="red">(DONE). <font color ="black">Some ongoing improvments
 
|
 
|
 
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|
 
|
 
|-
 
|-
|Improve enzyme functions, align with external databases, MF-BP links for enzymes/metabolic processes
+
|Cardiac Conduction Ontology Development
|Amelia, Chris, David, Jane, Tanya
+
|Ruth, Stan, Doug, David, Tanya, Becky, Paola and community experts
|
 
 
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|
 
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 +
|Content meeting at UCL
 
|
 
|
 
|-
 
|-
|Transcription overhaul
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|Apoptosis
|David, Karen
+
|Emily, Becky, Paola, Pablo and community experts
|Term Additions
 
|
 
|
 
|Term Obsoletions
 
|
 
 
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 +
|Interest meeting with experts @ EBI
 
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 +
|Collect feedback from experts at APO-SYS meeting
 +
|Revisiting caspase-related terms (phase I) <font color ="red">(DONE)
 +
|Revisiting top-level terms and existing annotations <font color ="red">(IN PROGRESS)
 +
|Revisiting caspase-related terms (phase II) and existing annotations
 
|-
 
|-
|Cardiac Conduction Ontology Development
+
|[[Virus_terms|Viral processes]]
|Ruth, Stan, Doug, David, Tanya and community experts
+
|Jane, Philippe Le Mercier (SIB) and community experts
 
|
 
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|Preliminary meeting to plan content meeting for fall 2011
 
 
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|Terms integrated in to live GO

Latest revision as of 06:26, 8 April 2019


Project Personel January February March April May June July August September October November December
Chemical terms in GO. Phase I: metabolism, binding, transport Harold, David, Tanya, Jane, Chris All GOCHE terms in CHEBI (DONE) GOCHE checked and correct (DONE) Meet with CHEBI in London - submit paper
Chemical terms in GO. Phase II: improve enzyme functions, align with external databases inc. Rhea, MF-BP links for enzymes/metabolic processes Amelia, Chris, David, Jane, Tanya, Becky, Paola
Cell ontology cross-products Paola, Chris, Jane, Alex
Internal Cross Products David, Tanya, Jane, Chris, Paola, Becky BPxCC occurs_in only (DONE) MFxCC?
Signaling overhaul Jen, Becky, Alex, Sandra, Peter, Ruth and others define FUNCTION signaling molecule terms Redefine receptor terms and standardise parentage/children (DONE) Adding ligand binding HAS_PART relationships to receptors Cleaning up receptors that aren't functions
Kidney Development David, Doug, Becky, Yasmin and community experts Paper submitted (DONE)
Protein complexes in GO Harold
Neurological processes and components Jane, Chris, David and Paola Added/rearranged some synapse-related GO terms
Transcription overhaul David, Karen Term Additions (DONE) Term Obsoletions (DONE) (DONE). Some ongoing improvments
Cardiac Conduction Ontology Development Ruth, Stan, Doug, David, Tanya, Becky, Paola and community experts Content meeting at UCL
Apoptosis Emily, Becky, Paola, Pablo and community experts Interest meeting with experts @ EBI Collect feedback from experts at APO-SYS meeting Revisiting caspase-related terms (phase I) (DONE) Revisiting top-level terms and existing annotations (IN PROGRESS) Revisiting caspase-related terms (phase II) and existing annotations
Viral processes Jane, Philippe Le Mercier (SIB) and community experts Terms integrated in to live GO