2011 UCL Meeting Agenda: Difference between revisions
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===Annotation Working Group (Emily, Rama)=== | ===Annotation Working Group (Emily, Rama)=== | ||
* Progress Report | * Progress Report | ||
** Development of GO annotation guidelines. (Geneva and Transcription factors). | |||
** Progress on the Community Annotation Tool (PomBase) [http://wiki.geneontology.org/index.php/Ideas_for_GOC_community_curation_tool See wiki] | ** Progress on the Community Annotation Tool (PomBase) [http://wiki.geneontology.org/index.php/Ideas_for_GOC_community_curation_tool See wiki] | ||
** ECO codes for GO annotation. [http://wiki.geneontology.org/index.php?title=Evidence_Code_Ontology_(ECO) See wiki] | ** ECO codes for GO annotation. [http://wiki.geneontology.org/index.php?title=Evidence_Code_Ontology_(ECO) See wiki] | ||
** Annotation QCs, including taxon constraints. | ** Annotation QCs, including taxon constraints. | ||
** Column 16 usage and development by groups | ** Column 16 usage and development by groups | ||
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**** specific use for column 16 (annotation extension field | **** specific use for column 16 (annotation extension field | ||
**** specific use proposed for explicitly defining a gp to GO term relationship. [http://wiki.geneontology.org/index.php/Relationships_between_annotation_objects_and_ontology_terms see wiki] | **** specific use proposed for explicitly defining a gp to GO term relationship. [http://wiki.geneontology.org/index.php/Relationships_between_annotation_objects_and_ontology_terms see wiki] | ||
=== Software Group: Annotation Display and Support activities?=== | |||
- presentation on the new GAF uploader tool? Supply of hard, soft and inferred annotations to submitters? | |||
- presentation on AmiGO2 and column 16 display intentions? |
Revision as of 06:43, 15 September 2011
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Agenda
Coffee from 9.00am Morning session to start at 9:30am End of sessions: 6pm Monday and Tuesday, 2pm on Wednesday GOC dinner Monday 6:30pm
Software
- Presentation on GOMine (Stanford group)
Annotation Working Group (Emily, Rama)
- Progress Report
- Column 16 usage and development by groups
- Annotation Proposals and Discussions
- IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
- The annotation of the stoichiometry of binding by GO groups. Under the spotlight: protein homodimerization, protein tetramerization etc.
- IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
- Annotation to Protein Complex objects: a suggested annotation format. see wiki page.
- Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
- specific use for column 16 (annotation extension field
- specific use proposed for explicitly defining a gp to GO term relationship. see wiki
- Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
Software Group: Annotation Display and Support activities?
- presentation on the new GAF uploader tool? Supply of hard, soft and inferred annotations to submitters? - presentation on AmiGO2 and column 16 display intentions?