2011 UCL Meeting Agenda: Difference between revisions
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==== Milestones Report ==== | ==== Milestones Report ==== | ||
* [https://sourceforge.net/apps/trac/geneontology/roadmap Roadmap] | * [https://sourceforge.net/apps/trac/geneontology/roadmap Roadmap] Chris | ||
* [https://sourceforge.net/apps/trac/geneontology/milestone/AmiGO2%20alpha AmiGO 2 alpha] | * [https://sourceforge.net/apps/trac/geneontology/milestone/AmiGO2%20alpha AmiGO 2 alpha] Seth | ||
* [https://sourceforge.net/apps/trac/geneontology/milestone/GOLD%20beta GOLD beta] | * [https://sourceforge.net/apps/trac/geneontology/milestone/GOLD%20beta GOLD beta] | ||
* [https://sourceforge.net/apps/trac/geneontology/milestone/TG1%20beta TermGenie 1 beta] | * [https://sourceforge.net/apps/trac/geneontology/milestone/TG1%20beta TermGenie 1 beta] Heiko | ||
* [https://sourceforge.net/apps/trac/geneontology/milestone/obo%20to%20owl%20roundtripping obo2owl roundtripping] | * [https://sourceforge.net/apps/trac/geneontology/milestone/obo%20to%20owl%20roundtripping obo2owl roundtripping] Heiko/Shahid | ||
** OORT | ** OORT | ||
* [https://sourceforge.net/apps/trac/geneontology/milestone/GPAD%20Specification%20and%20tools GPAD specification and tools] | * [https://sourceforge.net/apps/trac/geneontology/milestone/GPAD%20Specification%20and%20tools GPAD specification and tools] Amelia | ||
* GO Galaxy | * GO Galaxy | ||
** http://galaxy.berkeleybop.org:8080/ | ** http://galaxy.berkeleybop.org:8080/ | ||
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** Wrapping multiple term enrichment tools | ** Wrapping multiple term enrichment tools | ||
** Use case - miRNA pipeline | ** Use case - miRNA pipeline | ||
=== Ontology === | |||
* [[Ontology_Release_Files_Proposal]] Chris | |||
===Annotation Working Group (Emily, Rama)=== | ===Annotation Working Group (Emily, Rama)=== |
Revision as of 19:27, 1 October 2011
back to meeting logistics page
Agenda
Coffee from 9.00am Morning session to start at 9:30am End of sessions: 6pm Monday and Tuesday, 2pm on Wednesday GOC dinner Monday 6:30pm
Software
- Presentation on GOMine (Stanford group)
Milestones Report
- Roadmap Chris
- AmiGO 2 alpha Seth
- GOLD beta
- TermGenie 1 beta Heiko
- obo2owl roundtripping Heiko/Shahid
- OORT
- GPAD specification and tools Amelia
- GO Galaxy
- http://galaxy.berkeleybop.org:8080/
- Use by Phenoscape for obo-diffs
- Wrapping multiple term enrichment tools
- Use case - miRNA pipeline
Ontology
Annotation Working Group (Emily, Rama)
- Progress Report
- Column 16 usage and development by groups
- Annotation Proposals and Discussions
- IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
- The annotation of the stoichiometry of binding by GO groups. Under the spotlight: protein homodimerization, protein tetramerization etc.
- IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
- Annotation to Protein Complex objects: a suggested annotation format. see wiki page.
- Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
- specific use for column 16 (annotation extension field
- specific use proposed for explicitly defining a gp to GO term relationship. see wiki
- Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
Software Group: Annotation Display and Support activities?
- presentation on the new GAF uploader tool? Supply of hard, soft and inferred annotations to submitters? - presentation on AmiGO2 and column 16 display intentions?