2011 UCL Meeting Agenda: Difference between revisions

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** OORT
** OORT
* [https://sourceforge.net/apps/trac/geneontology/milestone/GPAD%20Specification%20and%20tools GPAD specification and tools]
* [https://sourceforge.net/apps/trac/geneontology/milestone/GPAD%20Specification%20and%20tools GPAD specification and tools]
* GO Galaxy
** http://galaxy.berkeleybop.org:8080/
** Use by Phenoscape for obo-diffs
** Wrapping multiple term enrichment tools


===Annotation Working Group (Emily, Rama)===
===Annotation Working Group (Emily, Rama)===

Revision as of 19:25, 1 October 2011

back to meeting logistics page

Agenda

Coffee from 9.00am Morning session to start at 9:30am End of sessions: 6pm Monday and Tuesday, 2pm on Wednesday GOC dinner Monday 6:30pm

Software

  • Presentation on GOMine (Stanford group)

Milestones Report

Annotation Working Group (Emily, Rama)

  • Progress Report
    • Development of GO annotation guidelines. (Geneva and Transcription factors).
    • Progress on the Community Annotation Tool (PomBase) See wiki
    • ECO codes for GO annotation. See wiki
    • Annotation QCs, including taxon constraints.
    • Column 16 usage and development by groups
  • Annotation Proposals and Discussions
    • IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
      • The annotation of the stoichiometry of binding by GO groups. Under the spotlight: protein homodimerization, protein tetramerization etc.
      • Annotation to Protein Complex objects: a suggested annotation format. see wiki page.
      • Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
        • specific use for column 16 (annotation extension field
        • specific use proposed for explicitly defining a gp to GO term relationship. see wiki

Software Group: Annotation Display and Support activities?

- presentation on the new GAF uploader tool? Supply of hard, soft and inferred annotations to submitters? - presentation on AmiGO2 and column 16 display intentions?