2011 UCL Meeting Agenda: Difference between revisions
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** OORT | ** OORT | ||
* [https://sourceforge.net/apps/trac/geneontology/milestone/GPAD%20Specification%20and%20tools GPAD specification and tools] | * [https://sourceforge.net/apps/trac/geneontology/milestone/GPAD%20Specification%20and%20tools GPAD specification and tools] | ||
* GO Galaxy | |||
** http://galaxy.berkeleybop.org:8080/ | |||
** Use by Phenoscape for obo-diffs | |||
** Wrapping multiple term enrichment tools | |||
===Annotation Working Group (Emily, Rama)=== | ===Annotation Working Group (Emily, Rama)=== |
Revision as of 19:25, 1 October 2011
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Agenda
Coffee from 9.00am Morning session to start at 9:30am End of sessions: 6pm Monday and Tuesday, 2pm on Wednesday GOC dinner Monday 6:30pm
Software
- Presentation on GOMine (Stanford group)
Milestones Report
- Roadmap
- AmiGO 2 alpha
- GOLD beta
- TermGenie 1 beta
- obo2owl roundtripping
- OORT
- GPAD specification and tools
- GO Galaxy
- http://galaxy.berkeleybop.org:8080/
- Use by Phenoscape for obo-diffs
- Wrapping multiple term enrichment tools
Annotation Working Group (Emily, Rama)
- Progress Report
- Column 16 usage and development by groups
- Annotation Proposals and Discussions
- IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
- The annotation of the stoichiometry of binding by GO groups. Under the spotlight: protein homodimerization, protein tetramerization etc.
- IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
- Annotation to Protein Complex objects: a suggested annotation format. see wiki page.
- Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
- specific use for column 16 (annotation extension field
- specific use proposed for explicitly defining a gp to GO term relationship. see wiki
- Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
Software Group: Annotation Display and Support activities?
- presentation on the new GAF uploader tool? Supply of hard, soft and inferred annotations to submitters? - presentation on AmiGO2 and column 16 display intentions?