2011 UCL Meeting Agenda: Difference between revisions

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** Beyond 2.2. - should there be a 3.0? Proteg4 plugin? Web-based tool? Lego?
** Beyond 2.2. - should there be a 3.0? Proteg4 plugin? Web-based tool? Lego?
* [https://sourceforge.net/apps/trac/geneontology/milestone/TG1%20beta TermGenie 1 beta] Heiko
* [https://sourceforge.net/apps/trac/geneontology/milestone/TG1%20beta TermGenie 1 beta] Heiko
** Retiring TG0
** Extensions - additional templates
* [https://sourceforge.net/apps/trac/geneontology/milestone/obo%20to%20owl%20roundtripping obo2owl roundtripping] Heiko/Shahid
* [https://sourceforge.net/apps/trac/geneontology/milestone/obo%20to%20owl%20roundtripping obo2owl roundtripping] Heiko/Shahid
** OORT
** OORT

Revision as of 19:35, 1 October 2011

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Agenda

Coffee from 9.00am Morning session to start at 9:30am End of sessions: 6pm Monday and Tuesday, 2pm on Wednesday GOC dinner Monday 6:30pm

Software

Milestones Report

Ontology

Annotation Working Group (Emily, Rama)

  • Progress Report
    • Development of GO annotation guidelines. (Geneva and Transcription factors).
    • Progress on the Community Annotation Tool (PomBase) See wiki
    • ECO codes for GO annotation. See wiki
    • Annotation QCs, including taxon constraints.
    • Column 16 usage and development by groups
  • Annotation Proposals and Discussions
    • IMEX Consortium's work on representing protein-protein interaction data: presentation by Sandra Orchard, IntAct, EBI, Cambridge UK (25 mins)
      • The annotation of the stoichiometry of binding by GO groups. Under the spotlight: protein homodimerization, protein tetramerization etc.
      • Annotation to Protein Complex objects: a suggested annotation format. see wiki page.
      • Use of the new relationship Ontology to describe relationships between entities in an annotation, and for the generation of detailed, composite GO terms
        • specific use for column 16 (annotation extension field
        • specific use proposed for explicitly defining a gp to GO term relationship. see wiki

Software Group: Annotation Display and Support activities?

- presentation on the new GAF uploader tool? Supply of hard, soft and inferred annotations to submitters? - presentation on AmiGO2 and column 16 display intentions?