View source for 2012 GOC Meeting Caltech

= Biological relevance - Paul S =
* GO as a biological reference (critique?)
** Strategy for prioritization of ontology development topics
*** Information content approach aka Gil
*** Emily summation of needed areas aka textbook
* Objectives for this meeting
** set quarterly objectives process

= Biological Representation - Paul T =
* Management of Ontology Development
** Jira tracking system (Jane)
** Automated ontology checks [[Jenkins]] (Chris)
** Term Genie Demo (Heiko)
* Incorporation of External ontologies (David and Jane)
** Report on migration of NIF subcellular AO to GO-CC (Jane)
** BFO 2.0 - do we comply with BFO and split part_of into 2 relations? (Chris)
** CHEBI  (David)
* LEGO status: current model and how it relates to col. 16 extensions
** 'annoton' data model (Chris and Paul)
** Protege plug-in for annotation (Heiko)
** Current examples (Kimberly and David)
** col. 16 extensions and LEGO (Paul, Chris, Jane, Rachael)


= Project infrastructure - Suzi  =
* CAT
** Architecture, services (Chris)
** WormBase experience with protein2go (Kimberly)
** Wormbase CC tool (Kimberly)
* PAINT
** PAINT annotation progress
* Enrichment tool improvement plans
** Standardize interface to tools & allow plug in play eg via [[Galaxy]]
** Promote tools that provide access to latest GO, work with those that don't. See [[GO Tools Registry]]
** Getting enrichment tools to leverage ontology and annotation improvements
*** other relationship types
*** CHEBI, CL etc
*** LEGO (Paul)
*** [[Annotation Extension]]

= Annotation Production - Judy =
* Annotation Production
** volume of annotations
** backlog of papers selected
*Term requests
** Current rate of additions & rate of clearance
** TermGenie
* GO Help
** Move to JIRA
** any new approaches? 
** biostars etc
** Tweeting?
** %of questions we can answer with available tools?
* Submissions from outside groups
** Web page with instructions (Rama)
** Future work here... (who has been in contact? any active outreach?)
* Automated annotation production
** [http://www.geneontology.org/GO.annotation_qc.shtml QC rules]
** [[Jenkins]]
* Project-led GOC annotation efforts (Paul S)
** New reporting page
** Observations/Comments
* Move to SVN
* Current ontology development and annotation topics on the table (one slide each)
*** cardio (Ruth)
*** apoptosis (Paola)
*** cell cycle (Val or Judy)
*** tRNA Modification (Harold)

= Web - Cherry =
* Licensing issues
* User interfaces
** GO-Mine/Enrichment
** AmiGO
** QuickGO
** Galaxy?
** New logo (just tell us)
* GO Website
** Need a webmaster?
** Switch to Drupal? (Seth)
* Dissemination
** Publication plans
** Meetings to attend
** New training material 
* [[GO Tools Registry]]
* GO & Linked Data

= Set objectives for next period (Paul S) =