2012 GOC Meeting Caltech: Difference between revisions
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** Should we make more use of text mining pipelines? | ** Should we make more use of text mining pipelines? | ||
** Wormbase CC tool | ** Wormbase CC tool | ||
* LEGO status: current model and how it relates to col. 16 extensions | * LEGO status: current model and how it relates to col. 16 extensions | ||
** 'annoton' data model (Chris and Paul) | ** 'annoton' data model (Chris and Paul) | ||
Line 58: | Line 50: | ||
* Objectives for next quarter (or until next meeting?) | * Objectives for next quarter (or until next meeting?) | ||
= Web - Cherry = | = Web - Cherry = | ||
* Enrichment tool improvement plans | |||
** Standardize interface to tools & allow plug in play eg via [[Galaxy]] | |||
** Promote tools that provide access to latest GO, work with those that don't. See [[GO Tools Registry]] | |||
** Getting enrichment tools to leverage ontology and annotation improvements | |||
*** other relationship types | |||
*** CHEBI, CL etc | |||
*** LEGO (Paul) | |||
*** [[Annotation Extension]] | |||
* Licensing issues | * Licensing issues | ||
* User interfaces | * User interfaces |
Revision as of 13:29, 19 September 2012
Goals
Biological relevance - Paul S
- GO as a biological reference (critique?)
- Objectives for next quarter (or until next meeting?)
Biological Representation - Paul T
- Automated ontology checks Jenkins
- External ontologies
- Report on migration of NIF subcellular AO to GO-CC (Jane)
- BFO 2.0 - do we comply with BFO and split part_of into 2 relations?
- CHEBI
- CL
- Ontology development by topics
- Cardio
- Objectives for next quarter (or until next meeting?)
Tools - Suzi
- CAT
- Architecture, services (Chris)
- WormBase experience with protein2go (Kimberly)
- Automated annotation tools
- Should we make more use of text mining pipelines?
- Wormbase CC tool
- LEGO status: current model and how it relates to col. 16 extensions
- 'annoton' data model (Chris and Paul)
- Protege plug-in for annotation (Heiko)
- Current examples (Kimberly and David)
- col. 16 extensions and LEGO (Paul, Chris, Jane, Rachael)
- PAINT
- PAINT annotation progress
- Objectives for next quarter (or until next meeting?)
Annotation Production - Judy
- Term requests
- Current rate of additions & rate of clearance
- TermGenie
- GO Help
- Move to JIRA
- any new approaches?
- biostars etc
- Tweeting?
- %of questions we can answer with available tools?
- Submissions from outside groups
- Web page with instructions (Rama)
- Future work here... (who has been in contact? any active outreach?)
- Automated annotation production
- Project-led GOC annotation efforts (Paul S)
- New reporting page
- Observations/Comments
- Move to SVN
- Objectives for next quarter (or until next meeting?)
Web - Cherry
- Enrichment tool improvement plans
- Standardize interface to tools & allow plug in play eg via Galaxy
- Promote tools that provide access to latest GO, work with those that don't. See GO Tools Registry
- Getting enrichment tools to leverage ontology and annotation improvements
- other relationship types
- CHEBI, CL etc
- LEGO (Paul)
- Annotation Extension
- Licensing issues
- User interfaces
- GO-Mine/Enrichment
- AmiGO
- QuickGO
- Galaxy?
- New logo (just tell us)
- GO Website
- Need a webmaster?
- Switch to Drupal? (Seth)
- Dissemination
- Publication plans
- Meetings to attend
- New training material
- GO Tools Registry
- GO & Linked Data
- Objectives for next quarter (or until next meeting?)