2012 GOC Meeting Caltech: Difference between revisions

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** Pulling in external annotations
** Pulling in external annotations
** Future work - who has been in contact? any active outreach?
** Future work - who has been in contact? any active outreach?
* GO Website update
** Switch to Drupal (Seth)
** New logo (Mike will just tell us)
** Need a webmaster?
* User interfaces
* User interfaces
** GO-Mine/Enrichment
** GO-Mine/Enrichment
** AmiGO
** AmiGO
** QuickGO
** QuickGO
** New logo (just tell us)
* GO Website update
** Need a webmaster?
** Switch to Drupal? (Seth)
* Dissemination
* Dissemination
** Publication plans
** Publication plans

Revision as of 18:48, 27 September 2012

2012 Caltech GOC Meeting Logistics

Biological relevance - Paul S

  • GO as a biological reference (critique?)
    • Strategy for prioritization of ontology development topics
      • Information content approach aka Gil
      • Emily summation of needed areas aka textbook
  • Objectives for this meeting
    • set quarterly objectives process

Biological Representation - Paul T

  • Management of Ontology Development
    • Jira tracking system (Jane)
    • Automated ontology checks Jenkins (Chris)
    • Term Genie Demo (Heiko)
  • Incorporation of External ontologies (David and Jane)
    • Report on migration of NIF subcellular AO to GO-CC (Jane)
    • BFO 2.0 - do we comply with BFO and split part_of into 2 relations? (Chris)
    • CHEBI (David)
  • LEGO status: current model and how it relates to col. 16 extensions
    • 'annoton' data model (Chris and Paul)
    • Protege plug-in for annotation (Heiko)
    • Current examples (Kimberly and David)
    • col. 16 extensions and LEGO (Paul, Chris, Jane, Rachael)


Project infrastructure - Suzi

  • CAT
    • Architecture, services (Chris)
    • protein2go introduction (Rachael)
    • WormBase experience with protein2go (Kimberly)
    • Wormbase CC tool (Kimberly)
  • PAINT
    • PAINT annotation progress
  • Enrichment (and other) tool improvement plans
    • Standardize interface to tools & allow plug in play eg via Galaxy
    • Promote tools that provide access to latest GO, work with those that don't. See GO Tools Registry
    • Getting enrichment tools to leverage ontology and annotation improvements
  • Move to SVN

Annotation Production - Judy

  • Annotation Production (Paul S)
    • volume of annotations
    • backlog of papers selected
    • New reporting page
    • Observations/Comments
  • Term requests
    • Current rate of additions & rate of clearance
    • TermGenie
  • GO Help
    • any new approaches?
    • biostars etc
    • Tweeting?
    • %of questions we can answer with available tools?
  • Automated annotation QC
    • Annotation "Quality" measurement (Mike)
    • Filtering of taxid that are not supported (Mike)
  • Current ontology development and annotation topics on the table (one slide each)
      • review of approach, staging (Judy)
      • cardio conduction (Ruth)
      • apoptosis (Paola)
      • cell cycle (Val or Judy)
      • tRNA Modification (Harold)

Web - Cherry

  • Licensing issues
  • Submissions and outreach to outside groups
    • Web page with instructions (Rama)
    • Pulling in external annotations
    • Future work - who has been in contact? any active outreach?
  • GO Website update
    • Switch to Drupal (Seth)
    • New logo (Mike will just tell us)
    • Need a webmaster?
  • User interfaces
    • GO-Mine/Enrichment
    • AmiGO
    • QuickGO
  • Dissemination
    • Publication plans
    • Meetings to attend
    • New training material

Set objectives for next period (Paul S)