2012 GOC Meeting Caltech: Difference between revisions
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** Current rate of additions & rate of clearance | ** Current rate of additions & rate of clearance | ||
** TermGenie | ** TermGenie | ||
* Standard processing of uploaded annotations | * Standard processing of uploaded annotations | ||
** [http://www.geneontology.org/GO.annotation_qc.shtml Automated annotation QC] | ** [http://www.geneontology.org/GO.annotation_qc.shtml Automated annotation QC] | ||
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* GO Website update | * GO Website update | ||
** Switch to Drupal (Seth) | ** Switch to Drupal (Seth) | ||
*** biostars etc | |||
*** Tweeting? | |||
** New logo (Mike will just tell us) | ** New logo (Mike will just tell us) | ||
** Need a webmaster? | ** Need a webmaster? | ||
* GO Help (Judy) | |||
** any new approaches? | |||
** %of questions we can answer with available tools? | |||
* User interfaces | * User interfaces | ||
** GO-Mine/Enrichment | ** GO-Mine/Enrichment |
Revision as of 19:59, 1 October 2012
2012 Caltech GOC Meeting Logistics
Biological relevance - Paul S
- GO as a biological reference (critique?)
- Strategy for prioritization of ontology development topics
- Information content approach aka Gil
- Emily summation of needed areas aka textbook
- Strategy for prioritization of ontology development topics
- Objectives for this meeting
- set quarterly objectives process
Biological Representation - Paul T
- Management of Ontology Development
- Jira tracking system (Jane)
- Automated ontology checks Jenkins (Chris)
- ontology publishing pipeline
- Term Genie status (Heiko)
- Incorporation of External ontologies (David and Jane)
- Report on migration of NIF subcellular AO to GO-CC (Jane)
- CHEBI (David)
- BFO 2.0 - (Chris)
- do we comply with BFO and split part_of into 2 relations? Need 'official' signoff of GO's stance
- Extensions to the GO annotation model
- LEGO data model, an 'annoton' (Chris and Paul)
- For prototyping: Protege plug-in for annotation (Heiko)
- Current examples (Kimberly and David)
- col. 16 extensions and relationship to LEGO (Paul, Chris, Jane, Rachael)
- LEGO data model, an 'annoton' (Chris and Paul)
Project infrastructure - Suzi
- CAT
- Architecture, services (Suzi)
- protein2go introduction (Rachael)
- WormBase experience with protein2go (Kimberly)
- Wormbase CC tool (Kimberly)
- Migration plans (Suzi)
- Short term: towards protein2go
- Longer term: capabilities to support LEGO
- PAINT (Paul T)
- PAINT annotation progress
- Enrichment (and other) tool improvement plans (Chris)
- Standardize interface to tools & allow plug in play eg via Galaxy
- Promote tools that provide access to latest GO, work with those that don't. See GO Tools Registry
- Getting enrichment tools to leverage ontology and annotation improvements
Annotation Production - Judy
- Annotation Production Progress/Tracking (Paul S)
- volume of annotations
- backlog of papers selected
- New reporting page
- Observations/Comments
- Term requests
- Current rate of additions & rate of clearance
- TermGenie
- Standard processing of uploaded annotations
- Automated annotation QC
- Annotation "Quality" measurement (Mike)
- Filtering of taxid that are not supported (Mike)
- Current ontology development and annotation topics on the table (one slide each)
- cardio conduction (Ruth)
- apoptosis (Paola)
- cell cycle (Val or Judy)
- tRNA Modification (Harold)
- review of approach, staging (Judy)
Web - Cherry
- Licensing issues
- Submissions and outreach to outside groups
- Web page with instructions (Rama)
- Pulling in external annotations
- Future work - who has been in contact? any active outreach?
- GO Website update
- Switch to Drupal (Seth)
- biostars etc
- Tweeting?
- New logo (Mike will just tell us)
- Need a webmaster?
- Switch to Drupal (Seth)
- GO Help (Judy)
- any new approaches?
- %of questions we can answer with available tools?
- User interfaces
- GO-Mine/Enrichment
- AmiGO (Seth & Ranjana)
- QuickGO
- Dissemination
- Publication plans
- Meetings to attend
- New training material