2012 GOC Meeting Caltech: Difference between revisions
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= [[2012 Caltech GOC Meeting Logistics]] = | = [[2012 Caltech GOC Meeting Logistics]] = | ||
= Biological relevance - Paul S = | = Biological relevance - Paul S - Sunday 10:30 = | ||
* GO as a biological reference (critique?) | * GO as a biological reference (critique?) | ||
** Strategy for prioritization of ontology development topics | ** Strategy for prioritization of ontology development topics | ||
| Line 8: | Line 8: | ||
** set quarterly objectives process | ** set quarterly objectives process | ||
= Biological Representation - Paul T = | = Biological Representation - Paul T - Sunday afternoon = | ||
* Management of Ontology Development | * Management of Ontology Development | ||
** Jira tracking system (Jane) | ** Jira tracking system (Jane) | ||
| Line 25: | Line 25: | ||
** col. 16 extensions and relationship to LEGO (Paul, Chris, Jane, Rachael) | ** col. 16 extensions and relationship to LEGO (Paul, Chris, Jane, Rachael) | ||
= Project infrastructure - Suzi | = Project infrastructure - Suzi - Monday morning to mid-afternoon = | ||
* CAT | * CAT | ||
** Architecture, services (Suzi) | ** Architecture, services (Suzi) | ||
| Line 41: | Line 41: | ||
** Getting enrichment tools to leverage ontology and annotation improvements | ** Getting enrichment tools to leverage ontology and annotation improvements | ||
= Annotation Production - Judy = | = Annotation Production - Judy Monday late afternoon to Tuesday mid-morning = | ||
* Annotation Production Progress/Tracking (Paul S) | * Annotation Production Progress/Tracking (Paul S) | ||
** volume of annotations | ** volume of annotations | ||
| Line 64: | Line 64: | ||
** Future work - who has been in contact? any active outreach? | ** Future work - who has been in contact? any active outreach? | ||
= Web - Cherry = | = Web - Cherry - Tuesday late morning to COB = | ||
* Licensing issues | * Licensing issues | ||
* GO Website and user interfaces | * GO Website and user interfaces | ||
Revision as of 20:19, 1 October 2012
2012 Caltech GOC Meeting Logistics
Biological relevance - Paul S - Sunday 10:30
- GO as a biological reference (critique?)
- Strategy for prioritization of ontology development topics
- Information content approach aka Gil
- Emily summation of needed areas aka textbook
- Strategy for prioritization of ontology development topics
- Objectives for this meeting
- set quarterly objectives process
Biological Representation - Paul T - Sunday afternoon
- Management of Ontology Development
- Jira tracking system (Jane)
- Automated ontology checks Jenkins (Chris)
- ontology publishing pipeline
- Term Genie status (Heiko)
- Incorporation of External ontologies (David and Jane)
- Report on migration of NIF subcellular AO to GO-CC (Jane)
- CHEBI (David)
- BFO 2.0 - (Chris)
- do we comply with BFO and split part_of into 2 relations? Need 'official' signoff of GO's stance
- Extensions to the GO annotation model
- LEGO data model, an 'annoton' (Chris and Paul)
- For prototyping: Protege plug-in for annotation (Heiko)
- Current examples (Kimberly and David)
- col. 16 extensions and relationship to LEGO (Paul, Chris, Jane, Rachael)
- LEGO data model, an 'annoton' (Chris and Paul)
Project infrastructure - Suzi - Monday morning to mid-afternoon
- CAT
- Architecture, services (Suzi)
- protein2go introduction (Rachael)
- WormBase experience with protein2go (Kimberly)
- Wormbase CC tool (Kimberly)
- Migration plans (Suzi)
- Short term: towards protein2go
- Longer term: capabilities to support LEGO
- PAINT (Paul T)
- PAINT annotation progress
- Enrichment (and other) tool improvement plans (Chris)
- Standardize interface to tools & allow plug in play eg via Galaxy
- Promote tools that provide access to latest GO, work with those that don't. See GO Tools Registry
- Getting enrichment tools to leverage ontology and annotation improvements
Annotation Production - Judy Monday late afternoon to Tuesday mid-morning
- Annotation Production Progress/Tracking (Paul S)
- volume of annotations
- backlog of papers selected
- New reporting page
- Observations/Comments
- Term requests
- Current rate of additions & rate of clearance
- Standard processing of uploaded annotations
- Automated annotation QC (Chris/Heiko)
- Annotation "Quality" measurement (Mike)
- Filtering of taxid that are not supported (Mike)
- Current ontology development and annotation topics on the table (one slide each)
- cardio conduction (Ruth)
- apoptosis (Paola)
- cell cycle (Val or Judy)
- tRNA Modification (Harold)
- review of approach, staging (Judy)
- Submissions and outreach to outside groups
- Web page with instructions (Rama)
- Pulling in external annotations
- Future work - who has been in contact? any active outreach?
Web - Cherry - Tuesday late morning to COB
- Licensing issues
- GO Website and user interfaces
- AmiGO 2 the sequel (Seth)
- QuickGO (Tony)
- GO-Mine (Ben/Kalpana)
- Biological utility survey (Ranjana)
- Switch to Drupal (Seth)
- dynamic monitoring of discussions (biostars, Tweets, etc.)
- New logo (Mike will just tell us)
- Need a webmaster?
- GO Help (Judy)
- any new approaches?
- %of questions we can answer with available tools?
- Dissemination
- Publication plans
- Meetings to attend
- New training material