Difference between revisions of "2012 GOC Meeting Caltech"

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= Biological relevance - Paul S =
 
= Biological relevance - Paul S =
 
* GO as a biological reference (critique?)
 
* GO as a biological reference (critique?)
* Enrichment tool improvement plans
 
** Standardize interface to tools & allow plug in play eg via [[Galaxy]]
 
** Promote tools that provide access to latest GO, work with those that don't. See [[GO Tools Registry]]
 
** Getting enrichment tools to leverage ontology and annotation improvements
 
*** other relationship types
 
*** CHEBI, CL etc
 
*** LEGO
 
*** [[Annotation Extension]]
 
 
* Objectives for next quarter (or until next meeting?)
 
* Objectives for next quarter (or until next meeting?)
 
= Biological Representation - Paul T =
 
= Biological Representation - Paul T =
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** Wormbase CC tool
 
** Wormbase CC tool
 
* PAINT
 
* PAINT
 +
* Enrichment tool improvement plans
 +
** Standardize interface to tools & allow plug in play eg via [[Galaxy]]
 +
** Promote tools that provide access to latest GO, work with those that don't. See [[GO Tools Registry]]
 +
** Getting enrichment tools to leverage ontology and annotation improvements
 +
*** other relationship types
 +
*** CHEBI, CL etc
 +
*** LEGO
 +
*** [[Annotation Extension]]
 
* Objectives for next quarter (or until next meeting?)
 
* Objectives for next quarter (or until next meeting?)
 
= Annotation Production - Judy =
 
= Annotation Production - Judy =

Revision as of 12:49, 17 September 2012

Goals

Biological relevance - Paul S

  • GO as a biological reference (critique?)
  • Objectives for next quarter (or until next meeting?)

Biological Representation - Paul T

  • PAINT annotation progress
  • Interactions with pathway database groups
    • Correspondence with GO pathways and resolution
  • Interactions with InterPro2GO group
  • LEGO status
  • Automated ontology checks Jenkins
  • External ontologies
    • Report on migration of NIF subcellular AO to GO-CC (Jane)
    • BFO 2.0 - do we comply with BFO and split part_of into 2 relations?
    • CHEBI
    • CL
  • Objectives for next quarter (or until next meeting?)

Tools - Suzi

  • CAT
    • Architecture
    • Status of difference services
    • 'annoton' data model
    • WormBase experience with protein2go
    • Protege plug-in for annotation
  • Automated annotation tools
    • Should we make more use of text mining pipelines?
    • Wormbase CC tool
  • PAINT
  • Enrichment tool improvement plans
    • Standardize interface to tools & allow plug in play eg via Galaxy
    • Promote tools that provide access to latest GO, work with those that don't. See GO Tools Registry
    • Getting enrichment tools to leverage ontology and annotation improvements
  • Objectives for next quarter (or until next meeting?)

Annotation Production - Judy

  • Term requests
    • Current rate of additions & rate of clearance
    • TermGenie
  • GO Help
    • Move to JIRA
    • any new approaches?
    • biostars etc
    • Tweeting?
    •  %of questions we can answer with available tools?
  • Submissions from outside groups
    • Web page with instructions (Rama)
    • Future work here... (who has been in contact? any active outreach?)
  • Automated annotation production
  • Project-led GOC annotation efforts (Paul S)
    • New reporting page
    • Observations/Comments
  • Move to SVN
  • Objectives for next quarter (or until next meeting?)

Web - Cherry

  • Licensing issues
  • User interfaces
    • GO-Mine/Enrichment
    • AmiGO
    • QuickGO
    • Galaxy?
    • New logo (just tell us)
  • GO Website
    • Need a webmaster?
    • Switch to Drupal? (Seth)
  • Dissemination
    • Publication plans
    • Meetings to attend
    • New training material
  • GO Tools Registry
  • GO & Linked Data
  • Objectives for next quarter (or until next meeting?)