Difference between revisions of "2012 GOC Meeting Caltech"
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= Biological relevance - Paul S = | = Biological relevance - Paul S = | ||
* GO as a biological reference (critique?) | * GO as a biological reference (critique?) | ||
| + | ** Strategy for prioritization of ontology development topics | ||
| + | *** Information content approach aka Gil | ||
| + | *** Emily summation of needed areas aka textbook | ||
* Objectives for next quarter (or until next meeting?) | * Objectives for next quarter (or until next meeting?) | ||
* Objectives for this meeting | * Objectives for this meeting | ||
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** BFO 2.0 - do we comply with BFO and split part_of into 2 relations? (Chris) | ** BFO 2.0 - do we comply with BFO and split part_of into 2 relations? (Chris) | ||
** CHEBI (David) | ** CHEBI (David) | ||
| − | * | + | * LEGO status: current model and how it relates to col. 16 extensions |
| − | ** | + | ** 'annoton' data model (Chris and Paul) |
| − | ** | + | ** Protege plug-in for annotation (Heiko) |
| − | ** | + | ** Current examples (Kimberly and David) |
| − | ** | + | ** col. 16 extensions and LEGO (Paul, Chris, Jane, Rachael) |
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| − | |||
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* Objectives for next quarter (or until next meeting?) | * Objectives for next quarter (or until next meeting?) | ||
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** WormBase experience with protein2go (Kimberly) | ** WormBase experience with protein2go (Kimberly) | ||
** Wormbase CC tool (Kimberly) | ** Wormbase CC tool (Kimberly) | ||
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* PAINT | * PAINT | ||
** PAINT annotation progress | ** PAINT annotation progress | ||
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* Move to SVN | * Move to SVN | ||
* Objectives for next quarter (or until next meeting?) | * Objectives for next quarter (or until next meeting?) | ||
| + | * Current ontology development and annotation topics on the table (one slide each) | ||
| + | *** cardio (Ruth) | ||
| + | *** apoptosis (Paola) | ||
| + | *** cell cycle (Val or Judy) | ||
| + | *** tRNA Modification (Harold) | ||
= Web - Cherry = | = Web - Cherry = | ||
Revision as of 08:37, 26 September 2012
Contents
Biological relevance - Paul S
- GO as a biological reference (critique?)
- Strategy for prioritization of ontology development topics
- Information content approach aka Gil
- Emily summation of needed areas aka textbook
- Strategy for prioritization of ontology development topics
- Objectives for next quarter (or until next meeting?)
- Objectives for this meeting
- set quarterly objectives process
Biological Representation - Paul T
- Management of Ontology Development
- Jira tracking system (Jane)
- Automated ontology checks Jenkins (Chris)
- Term Genie Demo (Heiko)
- Incorporation of External ontologies (David and Jane)
- Report on migration of NIF subcellular AO to GO-CC (Jane)
- BFO 2.0 - do we comply with BFO and split part_of into 2 relations? (Chris)
- CHEBI (David)
- LEGO status: current model and how it relates to col. 16 extensions
- 'annoton' data model (Chris and Paul)
- Protege plug-in for annotation (Heiko)
- Current examples (Kimberly and David)
- col. 16 extensions and LEGO (Paul, Chris, Jane, Rachael)
- Objectives for next quarter (or until next meeting?)
Project infrastructure - Suzi
- CAT
- Architecture, services (Chris)
- WormBase experience with protein2go (Kimberly)
- Wormbase CC tool (Kimberly)
- PAINT
- PAINT annotation progress
- Objectives for next quarter (or until next meeting?)
- Enrichment tool improvement plans
- Standardize interface to tools & allow plug in play eg via Galaxy
- Promote tools that provide access to latest GO, work with those that don't. See GO Tools Registry
- Getting enrichment tools to leverage ontology and annotation improvements
- other relationship types
- CHEBI, CL etc
- LEGO (Paul)
- Annotation Extension
Annotation Production - Judy
- Annotation Production
- volume of annotations
- backlog of papers selected
- Term requests
- Current rate of additions & rate of clearance
- TermGenie
- GO Help
- Move to JIRA
- any new approaches?
- biostars etc
- Tweeting?
- %of questions we can answer with available tools?
- Submissions from outside groups
- Web page with instructions (Rama)
- Future work here... (who has been in contact? any active outreach?)
- Automated annotation production
- Project-led GOC annotation efforts (Paul S)
- New reporting page
- Observations/Comments
- Move to SVN
- Objectives for next quarter (or until next meeting?)
- Current ontology development and annotation topics on the table (one slide each)
- cardio (Ruth)
- apoptosis (Paola)
- cell cycle (Val or Judy)
- tRNA Modification (Harold)
Web - Cherry
- Licensing issues
- User interfaces
- GO-Mine/Enrichment
- AmiGO
- QuickGO
- Galaxy?
- New logo (just tell us)
- GO Website
- Need a webmaster?
- Switch to Drupal? (Seth)
- Dissemination
- Publication plans
- Meetings to attend
- New training material
- GO Tools Registry
- GO & Linked Data
- Objectives for next quarter (or until next meeting?)
