2012 GOC Meeting Caltech

Biological relevance - Paul S

• GO as a biological reference (critique?)
• Objectives for next quarter (or until next meeting?)

Biological Representation - Paul T

• PAINT annotation progress
• LEGO status: current model and how it relates to col. 16 extensions
• Automated ontology checks Jenkins
• External ontologies
  • Report on migration of NIF subcellular AO to GO-CC (Jane)
  • BFO 2.0 - do we comply with BFO and split part_of into 2 relations?
  • CHEBI
  • CL
• Objectives for next quarter (or until next meeting?)

Tools - Suzi

• CAT
  • Architecture
  • Status of difference services
  • 'annoton' data model
  • WormBase experience with protein2go
  • Protege plug-in for annotation
• Automated annotation tools
  • Should we make more use of text mining pipelines?
  • Wormbase CC tool
• PAINT
• Enrichment tool improvement plans
  • Standardize interface to tools & allow plug in play eg via Galaxy
  • Promote tools that provide access to latest GO, work with those that don't. See GO Tools Registry
  • Getting enrichment tools to leverage ontology and annotation improvements
    • other relationship types
    • CHEBI, CL etc
    • LEGO
    • Annotation Extension
• Objectives for next quarter (or until next meeting?)

Annotation Production - Judy

• Term requests
  • Current rate of additions & rate of clearance
  • TermGenie
• GO Help
  • Move to JIRA
  • any new approaches?
  • biostars etc
  • Tweeting?
  • %of questions we can answer with available tools?
• Submissions from outside groups
  • Web page with instructions (Rama)
  • Future work here... (who has been in contact? any active outreach?)
• Automated annotation production
  • QC rules
  • Jenkins
• Project-led GOC annotation efforts (Paul S)
  • New reporting page
  • Observations/Comments
• Move to SVN
• Objectives for next quarter (or until next meeting?)

Web - Cherry

• Licensing issues
• User interfaces
  • GO-Mine/Enrichment
  • AmiGO
  • QuickGO
  • Galaxy?
  • New logo (just tell us)
• GO Website
  • Need a webmaster?
  • Switch to Drupal? (Seth)
• Dissemination
  • Publication plans
  • Meetings to attend
  • New training material
• GO Tools Registry
• GO & Linked Data
• Objectives for next quarter (or until next meeting?)