2013 Bar Harbor GOC Meeting Agenda: Difference between revisions

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# Update on Cross products- internal and external ontologies
===Friday 4 Oct (Annotation)===
# Update on column 16 and LEGO
#Annotation Production
## Tutorial on Col-16
## Quality control reports and how to manage them efficiently
# Quality control reports and how to manage them efficiently
### With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
# Common Annotation Tool
## Discussion of the best way to incorporate external annotations into the resource.
# PAINT annotation update
### Discuss which evidence codes to use for annotation predictions.
# Discussion of the best way to incorporate external annotations into the resource.
### Discuss strategies for incorporation
## Discuss which evidence codes to use for annotation predictions.
## Discuss strategies for incorporation
# Reactome Discussion
## Align ontology with Reactome's definitions of pathways (David et al). Work is similar to Chebi project.
## Reactome annotations, their use of ev.codes etc
## Reactome annotations, their use of ev.codes etc
# Proposal to integrate protein binding annotations
## Proposal to integrate protein binding annotations
# Possibility of an Annotation Camp in the near future (discuss dates/venue)
#Phylogenetic propagation of annotations
# With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
## PAINT annotation update


===Saturday 5 Oct (Tools and Ontology)===
#Annotation tools and Resources
## PAINT tool update
## Common Annotation Tool
## TermGenie Updates
## Update on column 16 and LEGO
### Tutorial on Col-16
#Ontology Development/ Biological Modeling
## Update on Cross products- internal and external ontologies
## Transition to OWL update
## Reactome Discussion
### Align ontology with Reactome's definitions of pathways (David et al). Work is similar to Chebi project.
## Molecular Function alignment with Rhea
===Sunday 6 Oct (Usability)===
#Biological Usability
##AMIGO
##Goose and other tools
##QuickGO
##GOHelp
#Future Meetings
##GOC meeting next Spring
## Possibility of an Annotation Camp in the near future (discuss dates/venue)


==Breakouts==
==Breakouts==

Revision as of 12:54, 10 September 2013

Friday 4 Oct (Annotation)

  1. Annotation Production
    1. Quality control reports and how to manage them efficiently
      1. With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
    2. Discussion of the best way to incorporate external annotations into the resource.
      1. Discuss which evidence codes to use for annotation predictions.
      2. Discuss strategies for incorporation
    3. Reactome annotations, their use of ev.codes etc
    4. Proposal to integrate protein binding annotations
  2. Phylogenetic propagation of annotations
    1. PAINT annotation update

Saturday 5 Oct (Tools and Ontology)

  1. Annotation tools and Resources
    1. PAINT tool update
    2. Common Annotation Tool
    3. TermGenie Updates
    4. Update on column 16 and LEGO
      1. Tutorial on Col-16
  2. Ontology Development/ Biological Modeling
    1. Update on Cross products- internal and external ontologies
    2. Transition to OWL update
    3. Reactome Discussion
      1. Align ontology with Reactome's definitions of pathways (David et al). Work is similar to Chebi project.
    4. Molecular Function alignment with Rhea

Sunday 6 Oct (Usability)

  1. Biological Usability
    1. AMIGO
    2. Goose and other tools
    3. QuickGO
    4. GOHelp
  2. Future Meetings
    1. GOC meeting next Spring
    2. Possibility of an Annotation Camp in the near future (discuss dates/venue)

Breakouts

Thurs 3 Oct

  1. Annotation extensions: for those already making c16 annotations and ontology developers
  2. LEGO group discussion
  3. Web documentation, Drupal transition
  4. Ontology group discussion: OWL/OBO editing workflow
  5. PAINT group discussion.
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