2013 Bar Harbor GOC Meeting Agenda: Difference between revisions

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### Align ontology with Reactome's definitions of pathways (David et al). Work is similar to Chebi project.
### Align ontology with Reactome's definitions of pathways (David et al). Work is similar to Chebi project.
## Molecular Function alignment with Rhea
## Molecular Function alignment with Rhea
## LEGO  (Paul T)
## AmiGO
## Goose


====<i>Field Trips:Enjoy Acadia National Park.  4:00pm</i>====
====<i>Field Trips:Enjoy Acadia National Park.  4:00pm</i>====

Revision as of 11:12, 18 September 2013

Thurs 3 Oct (Pre-Meeting Working Groups)

Some of these groups might instead be 'breakout' groups during the formal meeting.

  1. Annotation extensions: for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting
  2. CAT working group: next steps moving from Protein2GO to free-standing CAT (independent of UniProt)
  3. Web documentation, Drupal transition
  4. Ontology group discussion: OWL/OBO editing workflow
  5. PAINT group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur.
  6. LEGO group discussion

Friday 4 Oct (Annotation)

  1. Annotation Production (Mike)
    1. Quality control reports and how to manage them efficiently
      1. With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
    2. Discussion of the best way to incorporate external annotations into the resource.
      1. Discuss which evidence codes to use for annotation predictions.
      2. Discuss strategies for incorporation
    3. Reactome annotations, their use of ev.codes etc
    4. Proposal to integrate protein binding annotations
  2. PAINT annotation update (Paul T)
  3. PAINT tool update (Suzi)
  4. Common Annotation Tool update (Paul S)
  5. Tutorial on column 16 (Rachael)

Conference Dinner at 5:30 pm Cafe This Way

Saturday 5 Oct (Tools and Ontology)

  1. Ontology Development/ Biological Modeling (Judy)
    1. TermGenie Updates (Jane)
    2. Update on Cross products- internal and external ontologies (David)
    3. Transition to OWL update (Chris)
    4. Reactome Discussion
      1. Align ontology with Reactome's definitions of pathways (David et al). Work is similar to Chebi project.
    5. Molecular Function alignment with Rhea
    6. AmiGO
    7. Goose

Field Trips:Enjoy Acadia National Park. 4:00pm

Sunday 6 Oct (Usability)

  1. Biological Usability (Chris Mungall)
    1. AMIGO
    2. Goose and other tools
    3. QuickGO
    4. GOHelp (Jane Lomax)
  2. Future Meetings
    1. GOC meeting next Spring (Jim Hu)
    2. Possibility of an Annotation Camp in the near future (discuss dates/venue)