2013 Bar Harbor GOC Meeting Agenda: Difference between revisions

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These pre-meeting working groups will meet at [http://www.jax.org/about/directions.html The Jackson Laboratory].  Please arrive  30 minutes before the session you wish to attend so you can get a badge and escort.
These pre-meeting working groups will meet at [http://www.jax.org/about/directions.html The Jackson Laboratory].  Please arrive  30 minutes before the session you wish to attend so you can get a badge and escort.
* 10:00 - 11:00 am '''Web documentation, Drupal transition'''
* 10:00am - 11:00am '''Web documentation, Drupal transition'''
* 11:00 - 12:00 pm '''Ontology group discussion''': OWL/OBO editing workflow
* 11:00am - 12:00pm '''Ontology group discussion''': OWL/OBO editing workflow
* 12:00 - 1:00 pm '''LUNCH''' at Roscoe's
* 12:00pm - 1:00pm '''Lunch''' at Roscoe's
* 1:00 - 2:30 pm '''Annotation extensions''': for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting
* 1:00pm- 2:30pm '''Annotation extensions''': for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting
* 2:00 - 3:00 pm '''CAT working group''':  next steps moving from Protein2GO to free-standing CAT (independent of UniProt)
* 2:00pm - 3:00pm '''CAT working group''':  next steps moving from Protein2GO to free-standing CAT (independent of UniProt)
* 3:00 - 4:00 pm '''PAINT''' group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur.
* 3:00pm - 4:00pm '''PAINT''' group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur.
* 4:00 - 5:00 pm:  '''LEGO''' group discussion
* 4:00pm - 5:00pm:  '''LEGO''' group discussion


===Friday 4 Oct (Annotation)===
===Friday 4 Oct (Annotation)===

Revision as of 14:55, 18 September 2013

Thurs 3 Oct (Pre-Meeting Working Groups)

Some of these groups might instead be 'breakout' groups during the formal meeting.

These pre-meeting working groups will meet at The Jackson Laboratory. Please arrive 30 minutes before the session you wish to attend so you can get a badge and escort.

  • 10:00am - 11:00am Web documentation, Drupal transition
  • 11:00am - 12:00pm Ontology group discussion: OWL/OBO editing workflow
  • 12:00pm - 1:00pm Lunch at Roscoe's
  • 1:00pm- 2:30pm Annotation extensions: for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting
  • 2:00pm - 3:00pm CAT working group: next steps moving from Protein2GO to free-standing CAT (independent of UniProt)
  • 3:00pm - 4:00pm PAINT group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur.
  • 4:00pm - 5:00pm: LEGO group discussion

Friday 4 Oct (Annotation)

  1. Annotation Production (Mike)
    1. Quality control reports and how to manage them efficiently
      1. With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
    2. Discussion of the best way to incorporate external annotations into the resource.
      1. Discuss which evidence codes to use for annotation predictions.
      2. Discuss strategies for incorporation
    3. Reactome annotations, their use of ev.codes etc
    4. Proposal to integrate protein binding annotations
  2. Gold Standard Annotation Sets (Rama)
  3. PAINT annotation update (Paul T)
  4. PAINT tool update (Suzi)
  5. Common Annotation Tool update (Paul S)
  6. Tutorial on column 16 (Rachael)

Conference Dinner at 5:30 pm Cafe This Way

Saturday 5 Oct (Tools and Ontology)

  1. Ontology Development/ Biological Modeling (Judy)
    1. TermGenie Updates (Jane)
    2. Update on Cross products- internal and external ontologies (David)
    3. Transition to OWL update (Chris)
    4. Pathways in GOC
    5. Reactome Discussion
      1. Align ontology with Reactome's definitions of pathways (David H et al). Work is similar to Chebi project.
    6. Relationship between GOC and various pathway representations including wikipedida
    7. Molecular Function alignment with Rhea
    8. AmiGO
    9. Goose

Field Trips:Enjoy Acadia National Park. 4:00pm

Sunday 6 Oct (Usability)

  1. Biological Usability
    1. LEGO and pathways (Paul T)
  2. Future Meetings
    1. GOC meeting next Spring (Jim Hu)
    2. Possibility of an Annotation Camp in the near future (discuss dates/venue)