2013 Bar Harbor GOC Meeting Agenda: Difference between revisions
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## Discussion of the best way to incorporate external annotations into the resource. | ## Discussion of the best way to incorporate external annotations into the resource. | ||
### Discuss which evidence codes to use for annotation predictions. | ### Discuss which evidence codes to use for annotation predictions. | ||
### Discuss strategies for incorporation | ### Discuss strategies for incorporation, including non-MOD IEAs | ||
### Reactome annotations, their use of ev.codes etc | ### Reactome annotations, their use of ev.codes etc | ||
### Proposal to integrate protein binding annotations | ### Proposal to integrate protein binding annotations |
Revision as of 06:12, 26 September 2013
Thurs 3 Oct (Pre-Meeting Working Groups)
Some of these groups might instead be 'breakout' groups during the formal meeting.
These pre-meeting working groups will meet at The Jackson Laboratory. Please arrive 30 minutes before the session you wish to attend so you can get a badge and escort.
- 10:00am - 11:00am Web documentation, Drupal transition
- 11:00am - 12:00pm Ontology group discussion: OWL/OBO editing workflow
- 12:00pm - 1:00pm Lunch at Roscoe's
- 1:00pm- 2:30pm Annotation extensions: for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting
- 2:00pm - 3:00pm CAT working group: next steps moving from Protein2GO to free-standing CAT (independent of UniProt)
- 3:00pm - 4:00pm: LEGO group discussion
- 4:00pm - 5:00pm PAINT group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur.
Friday 4 Oct (Annotation)
- Annotation Production (Mike)
- Quality control reports and how to manage them efficiently
- Review of Jenkins GAF QC checks and inferences
- Location of files and what they contain - Heiko
- Examples from the MGI file and discussion of most efficient ways to deal with reports - David H.
- With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
- Review of Jenkins GAF QC checks and inferences
- Discussion of the best way to incorporate external annotations into the resource.
- Discuss which evidence codes to use for annotation predictions.
- Discuss strategies for incorporation, including non-MOD IEAs
- Reactome annotations, their use of ev.codes etc
- Proposal to integrate protein binding annotations
- Quality control reports and how to manage them efficiently
- Gold Standard Annotation Sets (Rama)
- PAINT annotation update (Paul T)
- PAINT tool update (Suzi)
- Common Annotation Tool update (Paul S)
- Tutorial on column 16 (Rachael)
Conference Dinner at 5:30 pm Cafe This Way
Saturday 5 Oct (Tools and Ontology)
- Ontology Development/ Biological Modeling (Judy)
- Biological content
- Neuronal cell components and integration with NIF (Paola)
- Apoptosis annotation update (Paola)
- Proposed Giardia/unicellular eukaryote cc expansion (Paola)
- cell cycle (Jane)
- virus project update (Becky)
- Uberon/CL/GO developments (David OS)
- Update on Cross products- internal and external ontologies (David H)
- TermGenie Template Updates
- CHEBI - http://www.biomedcentral.com/1471-2164/14/513
- Display of external ontologies in AmiGO 2
- Transition to OWL update (Chris)
- Inference of LEGO diagrams from GO annotations and external sources (Chris)
- Reactome Discussion
- Automated translation of Reactome & BioPAX to LEGO/OWL (Chris)
- Glycolysis example for comparison (David H)
- Pathways in GOC
- Relationship between GOC and various pathway representations including wikipathways
- Reactome Discussion
- Proposed json file format for GO annotations (up to LEGO-expressivity) (Chris)
- Molecular Function alignment with Rhea (Chris)
- Biological data interpretation (aka enrichment) (Chris)
- AmiGO 2 + Drupal site - your friends in the GO (Seth + Moni)
- Biological content
- Group Picture
- Biological Usability
- LEGO and pathways (Paul T)
Field Trips:Enjoy Acadia National Park. 4:00pm
Sunday 6 Oct (Usability)
- Future Meetings
- GOC meeting next Spring (Jim Hu)
- Possibility of an Annotation Camp in the near future (discuss dates/venue)
- Wrap Up