2013 Bar Harbor GOC Meeting Agenda
Thurs 3 Oct (Pre-Meeting Working Groups)
Some of these groups might instead be 'breakout' groups during the formal meeting.
These pre-meeting working groups will meet at The Jackson Laboratory. Please arrive 30 minutes before the session you wish to attend so you can get a badge and escort.
- 10:00am - 11:00am Web documentation, Drupal transition
- 11:00am - 12:00pm Ontology group discussion: OWL/OBO editing workflow
- 12:00pm - 1:00pm Lunch at Roscoe's
- 1:00pm- 2:30pm Annotation extensions: for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting
- 2:00pm - 3:00pm CAT working group: next steps moving from Protein2GO to free-standing CAT (independent of UniProt)
- 3:00pm - 4:00pm: LEGO group discussion
- 4:00pm - 5:00pm PAINT group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur.
Friday 4 Oct (Annotation)
- Annotation Production (Mike)
- Quality control reports and how to manage them efficiently
- Review of Jenkins GAF QC checks and inferences
- Location of files and what they contain - Heiko
- Examples from the MGI file and discussion of most efficient ways to deal with reports - David H.
- With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
- Review of Jenkins GAF QC checks and inferences
- Discussion of the best way to incorporate external annotations into the resource.
- Discuss which evidence codes to use for annotation predictions.
- Discuss strategies for incorporation
- Reactome annotations, their use of ev.codes etc
- Proposal to integrate protein binding annotations
- Quality control reports and how to manage them efficiently
- Gold Standard Annotation Sets (Rama)
- PAINT annotation update (Paul T)
- PAINT tool update (Suzi)
- Common Annotation Tool update (Paul S)
- Tutorial on column 16 (Rachael)
Conference Dinner at 5:30 pm Cafe This Way
Saturday 5 Oct (Tools and Ontology)
- Ontology Development/ Biological Modeling (Judy)
- TermGenie Updates (Jane)
- Neuronal cell components and integration with NIF (Paola)
- Update on Cross products- internal and external ontologies (David)
- Transition to OWL update (Chris)
- Inference of LEGO diagrams from GO annotations and external sources (Chris)
- Proposed json file format for GO annotations (up to LEGO-expressivity) (Chris)
- Pathways in GOC
- Reactome Discussion
- Align ontology with Reactome's definitions of pathways (David H et al). Work is similar to Chebi project.
- Automated translation of Reactome & BioPAX to LEGO/OWL (Chris)
- Relationship between GOC and various pathway representations including wikipathways
- Molecular Function alignment with Rhea (Chris)
- AmiGO 2 + GOpal - your friends in the GO (Seth + Moni)
- Goose
- Group Picture
- Biological Usability
- LEGO and pathways (Paul T)
Field Trips:Enjoy Acadia National Park. 4:00pm
Sunday 6 Oct (Usability)
- Future Meetings
- GOC meeting next Spring (Jim Hu)
- Possibility of an Annotation Camp in the near future (discuss dates/venue)
- Wrap Up