2013 Bar Harbor GOC Meeting Agenda

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Thurs 3 Oct (Pre-Meeting Working Groups)

Some of these groups might instead be 'breakout' groups during the formal meeting.

These pre-meeting working groups will meet at The Jackson Laboratory. Please arrive 30 minutes before the session you wish to attend so you can get a badge and escort.

  • 10:00am - 11:00am Web documentation, Drupal transition
  • 11:00am - 12:00pm Ontology group discussion: OWL/OBO editing workflow
  • 12:00pm - 1:00pm Lunch at Roscoe's
  • 1:00pm - 1:30pm Lab tour (optional)
  • 1:00pm - 2:30pm Annotation extensions: for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting
  • 2:00pm - 3:00pm CAT working group: next steps moving from Protein2GO to free-standing CAT (independent of UniProt)
  • 3:00pm - 4:00pm: LEGO group discussion
  • 4:00pm - 5:00pm PAINT group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur.

Friday 4 Oct (Annotation)

  1. Annotation Production (Mike)
    1. Quality control reports and how to manage them efficiently
      1. Review of Jenkins GAF QC checks and inferences
        1. Location of files and what they contain - Heiko
        2. Examples from the MGI file and discussion of most efficient ways to deal with reports - David H.
      2. With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
    2. Discussion of the best way to incorporate external annotations into the resource.
      1. Discuss which evidence codes to use for annotation predictions.
      2. Discuss strategies for incorporation, including non-MOD IEAs
      3. Reactome annotations, their use of ev.codes etc
      4. Proposal to integrate protein binding annotations
  2. Gold Standard Annotation Sets (Rama)
  3. PAINT annotation update (Paul T)
  4. PAINT tool update (Suzi)
  5. Common Annotation Tool update (Paul S)
  6. Tutorial on column 16 (Rachael)

Conference Dinner at 5:30 pm Cafe This Way

Saturday 5 Oct (Tools and Ontology)

  1. Ontology Development/ Biological Modeling (Judy)
    1. Biological content
      1. Neuronal cell components and integration with NIF (Paola)
      2. Apoptosis annotation update (Paola)
      3. Proposed Giardia/unicellular eukaryote cc expansion (Paola)
      4. cell cycle (Jane)
      5. virus project update (Becky)
      6. Uberon/CL/GO developments (David OS)
    2. Update on Cross products- internal and external ontologies (David H)
      1. TermGenie Template Updates
      2. CHEBI - http://www.biomedcentral.com/1471-2164/14/513
      3. Display of external ontologies in AmiGO 2
    3. Transition to OWL update (Chris)
    4. Inference of LEGO diagrams from GO annotations and external sources (Chris)
      1. Reactome Discussion
        1. Automated translation of Reactome & BioPAX to LEGO/OWL (Chris)
        2. Glycolysis example for comparison (David H)
        3. Pathways in GOC
        4. Relationship between GOC and various pathway representations including wikipathways
    5. Proposed json file format for GO annotations (up to LEGO-expressivity) (Chris)
    6. Molecular Function alignment with Rhea (Chris)
    7. Biological data interpretation (aka enrichment) (Chris)
    8. AmiGO 2 + Drupal site - your friends in the GO (Seth + Moni)
  2. Group Picture
  3. Biological Usability
    1. LEGO and pathways (Paul T)

Field Trips:Enjoy Acadia National Park. 4:00pm

Sunday 6 Oct (Usability)

  1. Future Meetings
    1. GOC meeting next Spring (Jim Hu)
    2. Possibility of an Annotation Camp in the near future (discuss dates/venue)
  2. Wrap Up