2013 Bar Harbor GOC Meeting Agenda: Difference between revisions
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## Biological data interpretation (aka enrichment) (Chris) | ## Biological data interpretation (aka enrichment) (Chris) | ||
## [http://amigo2.geneontology.org AmiGO 2] + [http://beta.geneontology.org Drupal site] - your friends in the GO (Seth + Moni) | ## [http://amigo2.geneontology.org AmiGO 2] + [http://beta.geneontology.org Drupal site] - your friends in the GO (Seth + Moni) | ||
### GO-FAQ and GO-help | |||
#Group Picture | #Group Picture | ||
#Biological Usability | #Biological Usability |
Revision as of 19:00, 26 September 2013
Thurs 3 Oct (Pre-Meeting Working Groups)
Some of these groups might instead be 'breakout' groups during the formal meeting.
These pre-meeting working groups will meet at The Jackson Laboratory. Please arrive 30 minutes before the session you wish to attend so you can get a badge and escort.
- 9:30am - 10:30am Web documentation, Drupal transition (room ERB 1421)
- 11:00am - 12:00pm Ontology group discussion: OWL/OBO editing workflow (room NRB 3035)
- 12:00pm - 1:00pm Lunch at Roscoe's
- 12:50pm - 1:30pm Lab tour (optional; Mark Wanner leading)
- 1:30pm - 2:30pm Annotation extensions: for those already making c16 annotations and ontology developers; This group will be finalizing what they want to present to the whole GOC during this meeting (room ERB 2519)
- 2:30pm - 3:00pm CAT working group: next steps moving from Protein2GO to free-standing CAT (independent of UniProt)(room ERB 2519)
- 3:00pm - 4:00pm: LEGO group discussion (room NRB 3035)
- 4:00pm - 5:00pm PAINT group discussion: This is a working group meeting for those PAINT curators and developers in town on Thur. (room NRB 3035)
Friday 4 Oct (Annotation)
Breakfast on your own
8:30 start (lunch at 12:30, breaks at 10:30 and 3:30)
- Annotation Production (Mike)
- Quality control reports and how to manage them efficiently
- Review of Jenkins GAF QC checks and inferences
- Location of files and what they contain - Heiko
- Examples from the MGI file and discussion of most efficient ways to deal with reports - David H.
- With/From column IDs (what is mandatory, how to move this to Jenkins for checking)
- Review of Jenkins GAF QC checks and inferences
- Discussion of the best way to incorporate external annotations into the resource.
- Discuss which evidence codes to use for annotation predictions.
- Discuss strategies for incorporation, including non-MOD IEAs
- Reactome annotations, their use of ev.codes etc
- Proposal to integrate protein binding annotations
- Quality control reports and how to manage them efficiently
- Gold Standard Annotation Sets (Rama)
- PAINT annotation update (Paul T)
- PAINT tool update (Suzi)
- Common Annotation Tool update (Paul S)
- Tutorial on column 16 (Rachael)
Conference Dinner at 5:30 pm Cafe This Way
Saturday 5 Oct (Tools and Ontology)
Breakfast on your own
8:30 start (lunch at 12:30, breaks at 10:30 and 3:30)
- Ontology Development/ Biological Modeling (Judy)
- Biological content
- Neuronal cell components and integration with NIF (Paola)
- Apoptosis annotation update (Paola)
- Proposed Giardia/unicellular eukaryote cc expansion (Paola)
- cell cycle (Jane)
- virus project update (Becky)
- Uberon/CL/GO developments (David OS)
- Update on Cross products- internal and external ontologies (David H)
- TermGenie Template Updates
- CHEBI - http://www.biomedcentral.com/1471-2164/14/513
- Display of external ontologies in AmiGO 2
- Transition to OWL update (Chris)
- Inference of LEGO diagrams from GO annotations and external sources (Chris)
- Reactome Discussion
- Automated translation of Reactome & BioPAX to LEGO/OWL (Chris)
- Glycolysis example for comparison (David H)
- Pathways in GOC
- Relationship between GOC and various pathway representations including wikipathways
- Reactome Discussion
- Proposed json file format for GO annotations (up to LEGO-expressivity) (Chris)
- Molecular Function alignment with Rhea (Chris)
- Biological data interpretation (aka enrichment) (Chris)
- AmiGO 2 + Drupal site - your friends in the GO (Seth + Moni)
- GO-FAQ and GO-help
- Biological content
- Group Picture
- Biological Usability
- LEGO and pathways (Paul T)
Field Trips: Enjoy Acadia National Park. 4:00pm
Sunday 6 Oct (Usability) (NOTE: MIGHT BE ALL MOVED TO SATURDAY)
- Future Meetings
- GOC meeting next Spring (Jim Hu, Paul Thomas) (College Station, Texas) will include SAB meeting
- Possibility of an Annotation Camp in the near future (discuss dates/venue)
- Papers published and in progress
- Wrap Up