2013 Cambridge GOC Meeting Agenda

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The 2013 GO Consortium meeting will be held 11-13 April, in Cambridge, UK, immediately following Biocuration 2013.

Agenda for Thursday

  • 8:30AM MeetUp
  • 9:00AM Start
  • 10:30AM break
  • 12:30PM lunch
  • 3:30PM afternoon break
  • 7PM Dinner at the Moller Centre (cash bar)


GOAL:Provide community with ability to obtain and use GO resources

Biological Knowledge

  • Transition to OWL progress and status (Chris)
  • Interaction between ontology development and annotation
    • Current mechanisms: tracker, TG, Jira (Jane)
    • Update on existing TG templates, tree browser esp CHEBI, numbers of terms added (Jane) Media:TGreview_Cambridge_April13.pdf
    • TermGenie freeform demo (Jane)
  • Cross-product status, inc cell type (David)
  • Cell cycle report (Val)
  • Annotation expressivity
    • LEGO
      • Test example: Wnt signaling (David)
      • Implementation plan (Chris)
      • Mapping to community representations, e.g. BioPAX, SBGN (Huaiyu)
    • Annotation extensions (Rachael)
      • Annotation relations
    • GPAD status (Chris)

Comparative and Phylogenetic Annotations

  • PAINT progress, including overview of SOPs (Huaiyu)
    • PAINT progress overview (Paul T.)
    • SOP overview (Pascale)
    • Example (Donghui)
    • Update on JsPAINT (Chris/Suzi)
  • Jenkins for QC - http://build.berkeleybop.org/view/GAF/ (Heiko)
  • ECO update (Chris)
  • New rules for ISO mouse/human/rat when M:N gene sets (Judy)

Literature Annotation

  • apoptosis (re)annotation effort (Paola) File:GOC 2013 Cambridge.pdf
  • production statistic reports (Paul S)
  • Curation tools: transition to Protein-GO, prospects for text-mining integratrion

Friday afternoon breakout sessions

1. Annotation Extension

Interested in attending: Jane, Rachael, Susan, Petra, Mary, David, Midori, Chris, Kimberly, Ruth, Donghui, Tanya, Val, Harold,
Rama, SGD curators, Rebecca, Li, Prudence

2. PAINT Meeting - Huaiyu

  • including ontology developers
  • Look at annotation consistency
Interested in attending: Jane, Susan, Ruth, Donghui,Val, Rama, Li

3. Cell cycle

  • WG to work through outstanding issues
Interested in attending: Jane, Rachael, Susan, David, Tanya, Val, Paola, Rebecca, Prudence

Action Item Review and Reports

Caltech meeting minutes meeting minutes as a Google Doc

See also