2013 Cambridge GOC Meeting Agenda
The 2013 GO Consortium meeting will be held 11-13 April, in Cambridge, UK, immediately following Biocuration 2013.
Thursday (starts at 8:30)
Usability
GOAL:Provide community with ability to obtain and use GO resources
- Update on Galaxy (Chris) (8:30-9)
- New Web Site http://beta.geneontology.org - drupal (Seth) (9-9:30)
- AmiGO 2.0 (Seth & Chris)
- Platinum standard data sets for enrichment analyses (Paul S, Rama) (9:30-10:15)
Coffee break (10:15-10:45)
Comparative and Phylogenetic Annotations
- PAINT progress, including overview of SOPs
- PAINT progress overview (Paul T.) (10:45-11)
- SOP overview plus example (Donghui) (11-11:20)
- Examples of annotation issues in PAINT, plus discussion (11:20-12) (Paul T, Pascale)
Lunch (12-1)
- Update on JsPAINT (Chris/Suzi) (1-1:15)
- Jenkins for QC - http://build.berkeleybop.org/view/GAF/ (Heiko) (1:15-1:30)
- ECO update (Chris) (1:30-1:40)
- New rules for ISO mouse/human/rat when M:N gene sets (Judy) (1:40-2)
Literature Annotation
- apoptosis (re)annotation effort (Paola) File:GOC 2013 Cambridge.pdf (2-2:30)
- production statistic reports (Paul S) (2:30-2:45)
== Coffee break (2:45-3:15)
- Curation tools: transition to Protein-GO, prospects for text-mining integratrion (3:15-4:15)
Biological Knowledge
- Transition to OWL progress and status (Chris) (4:15-4:45)
- Interaction between ontology development and annotation (4:45-5:15)
- Current mechanisms: tracker, TG, Jira (Jane)
- Update on existing TG templates, tree browser esp CHEBI, numbers of terms added (Jane) Media:TGreview_Cambridge_April13.pdf
- TermGenie freeform demo (Jane)
Dinner at Moller Centre (7pm)
Friday afternoon breakout sessions
1. Annotation Extension
- New property_values replacing domain/range (Chris and Tony)
- Subsets of relations to enable easy use by curators (http://wiki.geneontology.org/index.php/Ontology_meeting_2013-03-21#Annotation_relations) (Jane and Rachael)
- Transferring annotation extensions by sequence similarity (Rachael)
- Annotation extension unfolding and conversion to LEGO (Chris)
Interested in attending: Jane, Rachael, Susan, Petra, Mary, David, Midori, Chris, Kimberly, Ruth, Donghui, Tanya, Val, Harold, Rama, SGD curators, Rebecca, Li, Prudence, Doug
2. PAINT Meeting - Huaiyu
- including ontology developers
- Look at annotation consistency
Interested in attending: Jane, Susan, Ruth, Donghui,Val, Rama, Li
3. Cell cycle
- WG to work through outstanding issues
Interested in attending: Jane, Rachael, Susan, David, Tanya, Val, Paola, Rebecca, Prudence
Saturday
Biological Knowledge (continued)
- Cross-product status, inc cell type (David) (8:30-9)
- Cell cycle report (Val) (9-9:30)
- Annotation expressivity
- LEGO
- Test example: Wnt signaling (David) (9:30-10)
- Implementation plan (Chris) (10-10:20)
- LEGO
Coffee break (10:20-10:45)
Meeting wrap up and action item review (11:40-12:15)
Action Item Review and Reports
Caltech meeting minutes meeting minutes as a Google Doc
See also