2013 Cambridge GOC Meeting Agenda

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The 2013 GO Consortium meeting will be held 11-13 April, in Cambridge, UK, immediately following Biocuration 2013.

Thursday (starts at 8:30)

Usability

GOAL:Provide community with ability to obtain and use GO resources

Coffee break (10:15-10:45)

Comparative and Phylogenetic Annotations

  • PAINT progress, including overview of SOPs
    • PAINT progress overview (Paul T.) (10:45-11)
    • SOP overview plus example (Donghui) (11-11:20)
    • Examples of annotation issues in PAINT, plus discussion (11:20-12) (Paul T, Pascale)

Lunch (12-1)

    • Update on JsPAINT (Chris/Suzi) (1-1:15)
  • Jenkins for QC - http://build.berkeleybop.org/view/GAF/ (Heiko) (1:15-1:30)
  • ECO update (Chris) (1:30-1:40)
  • New rules for ISO mouse/human/rat when M:N gene sets (Judy) (1:40-2)

Literature Annotation

== Coffee break (2:45-3:15)

  • Curation tools: transition to Protein-GO, prospects for text-mining integratrion (3:15-4:15)

Biological Knowledge

  • Transition to OWL progress and status (Chris) (4:15-4:45)
  • Interaction between ontology development and annotation (4:45-5:15)
    • Current mechanisms: tracker, TG, Jira (Jane)
    • Update on existing TG templates, tree browser esp CHEBI, numbers of terms added (Jane) Media:TGreview_Cambridge_April13.pdf
    • TermGenie freeform demo (Jane)

Dinner at Moller Centre (7pm)

Friday afternoon breakout sessions

1. Annotation Extension

Interested in attending: Jane, Rachael, Susan, Petra, Mary, David, Midori, Chris, Kimberly, Ruth, Donghui, Tanya, Val, Harold,
Rama, SGD curators, Rebecca, Li, Prudence

2. PAINT Meeting - Huaiyu

  • including ontology developers
  • Look at annotation consistency
Interested in attending: Jane, Susan, Ruth, Donghui,Val, Rama, Li

3. Cell cycle

  • WG to work through outstanding issues
Interested in attending: Jane, Rachael, Susan, David, Tanya, Val, Paola, Rebecca, Prudence

Saturday

Biological Knowledge (continued)

  • Cross-product status, inc cell type (David) (8:30-9)
  • Cell cycle report (Val) (9-9:30)
  • Annotation expressivity
    • LEGO
      • Test example: Wnt signaling (David) (9:30-10)
      • Implementation plan (Chris) (10-10:20)

Coffee break (10:20-10:45)

      • Mapping to community representations, e.g. BioPAX, SBGN (Huaiyu) (10:45-11:05)
    • Annotation extensions (Rachael) (11:05-11:30)
      • Annotation relations
    • GPAD status (Chris) (11:30-11:40)

Meeting wrap up and action item review (11:40-12:15)

Action Item Review and Reports

Caltech meeting minutes meeting minutes as a Google Doc

See also