2014 College Station GOC Meeting Agenda

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Revision as of 11:08, 5 February 2014 by Paul Thomas (talk | contribs) (Saturday 15 March - Pre-Meeting Working Group(s))

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  • (Add link to google doc here)

Progress Reports

  • Progress reports by Aim (add links here)
    1. Literature Annotation
    2. PAINT Annotation
    3. Common Annotation Framework
    4. Ontologies
    5. Delivery of Annotation and Ontologies to the Community
  • Response to SAB
    1. SAB report from Cambridge April 2013 ( [1])
    2. Our reponse...
  • Questions for SAB


  • Assign 'official' note takers, set up Google doc for notes and so everyone can augment, introductions of new people

Saturday 15 March - Pre-Meeting Working Group(s)

Jim will direct pre-meeting working group(s?) to empty classrooms to meet.

  • Need to define specific issues we need to resolve in person. Suggest that we try to divide some of these issues into subgroups that can meet in parallel.
  • 9:00am - 05:00pm Molecular Modeling Framework (Paul T, Paul S, Suzi, Kimberly, Jane, Chris, Heiko, Seth, Rachael, Huaiyu, Tony, David H, David O-S, Tanya)
    1. Framework - We'll draw up some pictures of the different pieces and how they fit together to get everyone on the same page. We'll discuss where questions still remain.
    2. LEGO/MOMO UI - We are now at the stage where we have a working annotation UI available for initial feedback. It connects to the existing LEGO data (stored at present in files under SVN) and thus provides a realistic tool for evaluation. We can also extends these by seeding them with existing GO annotations if a curator wants to work on a particular module. After such seeding a curator can review what's already been annotated and incorporate it into the module.
    3. Ontology - Sort out how to do multi-species annotation and the overall OWL modeling
    4. Integration - We currently have several useful annotation tools for different pieces, but would like to make this more seamless for curators. What code can we share? What signals can we pass?
    5. Roadmap - Milestones and 6-month to year plan for bringing this into eventual production. We can revisit the framework from the morning and revise it based on the day's discussion (for showing at the big meeting the next day).
  • Time TBA Catalytic activity/Metabolic Process (Jim, Tanya, David, Chris, Heiko, Peter, Harold, Jane, TAMU experts)
    1. Agenda: specifics to follow - likely modeling of biochemical pathways in GO, some specifics of EC/GO mapping/interaction, some lingering SF items relating to catalytic activity children and the underlying general problems they revealed
  • Time TBA miRNA Annotations

Sunday 16 March - Community relations and Annotation Production

Breakfast on your own

8:30 Start

10:30 - 11:00 Break

12:30 - 2:00 pm Lunch

3:30 - 3:45 pm Break

5:30 Group Photo

Conference Dinner

Monday 17 March - Annotation Infrastructure, Ontology Development, and Planning

Breakfast on your own

8:30 Start

  • Exports of GO, retiring GO full - Mike, Chris, Seth

10:30 - 11:00 Break

12:30 - 2:00 pm Lunch

3:30 - 3:45 pm Break

SAB Dinner

Tuesday 18 March - SAB meeting

8:30 - Presentations of progress

  • Presentations to SAB (~3 hours. Judy, Mike, Suzi, Paul S, Paul T)

11:30 - 1:30 pm Lunch

  • SAB discussions privately

1:30 - 3:30 Feedback

  • SAB reports to PIs

3:30 pm End of meeting