2016 Los Angeles GOC Meeting Agenda: Difference between revisions
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=Agenda= | |||
==Conference Calls== | |||
*Proposal to consolidate LEGO, Annotation, PAINT, and Ontology Development calls into one GO call held weekly on Tuesdays at 8am PST | |||
*These areas of annotation, and ontology development, are, or have been, converging for some time now and we think it would be a better use of everyone's time to have one weekly call where we discuss any annotation- or ontology-related issues | |||
==Annotation Issues - Conventional Annotations== | |||
*Modified protein binding: GO terms & annotations are very inconsistent. | *Modified protein binding: GO terms & annotations are very inconsistent. | ||
**Recent github issues: | **Recent github issues: | ||
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ubiquitinated protein binding https://github.com/geneontology/go-ontology/issues/12582#issuecomment-240452320 | ubiquitinated protein binding https://github.com/geneontology/go-ontology/issues/12582#issuecomment-240452320 | ||
==Annotation Issues - LEGO Annotations== | |||
*How are we going to handle ECO codes in Noctua. Currently there are only a limited number of codes that fall under 'used in manual assertion'. If we use codes that are not specific to the manual assertion part of the ontology, then they map to EXP. Are we going to request the entire set of codes that we think we might want to use or are we going to have an automated way to map to the correct code? | *How are we going to handle ECO codes in Noctua. Currently there are only a limited number of codes that fall under 'used in manual assertion'. If we use codes that are not specific to the manual assertion part of the ontology, then they map to EXP. Are we going to request the entire set of codes that we think we might want to use or are we going to have an automated way to map to the correct code? | ||
*Are we going to allow Noctua to make annotations to the root nodes of the ontology? This would be useful for contextual annotations that are to otherwise root nodes. However some groups block these kinds of annotations because in the past, these annotations were used to keep track of genes about which we had no information. | *Are we going to allow Noctua to make annotations to the root nodes of the ontology? This would be useful for contextual annotations that are to otherwise root nodes. However some groups block these kinds of annotations because in the past, these annotations were used to keep track of genes about which we had no information. | ||
Revision as of 14:47, 19 September 2016
Agenda
Conference Calls
- Proposal to consolidate LEGO, Annotation, PAINT, and Ontology Development calls into one GO call held weekly on Tuesdays at 8am PST
- These areas of annotation, and ontology development, are, or have been, converging for some time now and we think it would be a better use of everyone's time to have one weekly call where we discuss any annotation- or ontology-related issues
Annotation Issues - Conventional Annotations
- Modified protein binding: GO terms & annotations are very inconsistent.
- Recent github issues:
glycoprotein binding: https://github.com/geneontology/go-ontology/issues/12580#issuecomment-240782020 ubiquitinated protein binding https://github.com/geneontology/go-ontology/issues/12582#issuecomment-240452320
Annotation Issues - LEGO Annotations
- How are we going to handle ECO codes in Noctua. Currently there are only a limited number of codes that fall under 'used in manual assertion'. If we use codes that are not specific to the manual assertion part of the ontology, then they map to EXP. Are we going to request the entire set of codes that we think we might want to use or are we going to have an automated way to map to the correct code?
- Are we going to allow Noctua to make annotations to the root nodes of the ontology? This would be useful for contextual annotations that are to otherwise root nodes. However some groups block these kinds of annotations because in the past, these annotations were used to keep track of genes about which we had no information.