2017 Berkeley GO Editors Workshop II
Party! (or at least dinner together)
- Where: 2 Biehs Court, Oakland, CA 94618
- When: Wednesday, August 16 (whenever the meeting closes down and you get over there)
- Ideas for what you'd like to eat? And drink?
Agenda (Draft)
Topics
Fundamentals
- Understanding OWL reasoning. A practical sessions with problem solving exercises, covering:
- Equivalent Class, SubClass; Relations: Characteristics, hierarchy, chains, domain and range; GCIs; advanced querying; explanations.
- Understanding the current GO relation set. (A practical session with problem solving exercises + aim to develop better doc)
- The art of designing robust equivalence axioms & design patterns ( editors would like more guidelines on how to construct these.)
Infrastructure
* Design pattern infrastructure * Pipelines and how they run, both imports and file output. Starting jobs with ROBOT. * Build failures * Document the various fail messages and how to correct the issues. * Ontology work for GO-CAM ** QC-checking property chains and relations that will be used for GPAD generation ** Removing the part_of o regulates chains--- Do we want to instantiate all of the current inferences before removal?
Content
* Problematic GitHub tickets/mini Projects ** Pascale: #13731 * Review the accumulated use cases for GO from ontology ticket #13606. Discuss how we can continue to best meet the needs of our various communities.
Logistics
Accommodations
Getting there:
Taxis also available from either MacArthur or Ashby
Parking
Visitor parking is available, see:
Meeting Location
Berkeley Lab, Aquatic Park Offices
Lawrence Berkeley National Laboratory (LBNL), Aquatic Park office of Biosciences Operations at Berkeley Physical address: 717 Potter Street, Berkeley, CA 94710
Meeting room: room 181
Travel between hotel and meeting
- Walk, 1.3 miles
- Free Hollis Shuttle
- Taxi/Lyft/Uber
Aim to be at the lab for 9am
Participants
Name | Organization | Comments | |
---|---|---|---|
David Hill | Jackson Laboratory | ||
Harold Drabkin | Jackson Laboratory | ||
Kimberly Van Auken | Caltech | Arriving SFO Monday, 8/14, 5:03PM | |
Pascale Gaudet | SIB Swiss Institute of Bioinformatics | ||
David Osumi-Sutherland | EBI | ||
Karen Christie | Jackson Laboratory | ||
Tanya Berardini | TAIR/Phoenix | ||
Huaiyu Mi | USC | ||
Nicole Vasilevsky | OHSU | ||
Matt Horridge | Stanford | possible |
LBL:
- Chris Mungall
- Eric Douglass
- Monica Munoz-Torres
- Seth Carbon
- Suzi Lewis