2017 Berkeley GO Editors Workshop II: Difference between revisions
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Lawrence Berkeley National Laboratory (LBNL), Aquatic Park office of Biosciences Operations at Berkeley | Lawrence Berkeley National Laboratory (LBNL), Aquatic Park office of Biosciences Operations at Berkeley | ||
Physical address: 717 Potter Street, Berkeley, CA 94710 | Physical address: 717 Potter Street, Berkeley, CA 94710 | ||
Meeting room: room 181 | |||
=== Travel between hotel and meeting === | === Travel between hotel and meeting === |
Revision as of 16:02, 5 July 2017
Agenda (Draft)
Topics
Fundamentals
* Understanding OWL reasoning. A practical sessions with problem solving exercises, covering: * Equivalent Class, SubClass; Relations: Characteristics, hierarchy, chains, domain and range; GCIs; advanced querying; explanations. * Understanding the current GO relation set. (A practical session with problem solving exercises + aim to develop better doc) * The art of designing robust equivalence axioms & design patterns ( editors would like more guidelines on how to construct these.)
Infrastructure
* Design pattern infrastructure * Pipelines and how they run, both imports and file output. Starting jobs with ROBOT. * Build failures * Document the various fail messages and how to correct the issues.
Content
* Problematic GitHub tickets/mini Projects * Review the accumulated use cases for GO from ontology ticket #13606. Discuss how we can continue to best meet the needs of our various communities.
Logistics
Accommodations
Getting there:
Taxis also available from either MacArthur or Ashby
Meeting Location
Berkeley Lab, Aquatic Park Offices
Lawrence Berkeley National Laboratory (LBNL), Aquatic Park office of Biosciences Operations at Berkeley Physical address: 717 Potter Street, Berkeley, CA 94710
Meeting room: room 181
Travel between hotel and meeting
- Walk, 1.3 miles
- Free Hollis Shuttle
- Taxi/Lyft/Uber
Aim to be at the lab for 9am
Participants
Name | Organization | Comments | |
---|---|---|---|
David Hill | Jackson Laboratory | ||
Harold Drabkin | Jackson Laboratory | ||
Kimberly Van Auken | Caltech | ||
Pascale Gaudet | SIB Swiss Institute of Bioinformatics | ||
David Osumi-Sutherland | EBI | ||
Karen Christie | Jackson Laboratory |
LBL:
- Chris Mungall
- Eric Douglass
- Monica Munoz-Torres
- Seth Carbon