2017 Cambridge GOC Signalling Workshop: Difference between revisions
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==Location== | |||
* [https://map.cam.ac.uk/Department+of+Biochemistry#52.202365,0.121385,18 Hopkins Building, Biochemistry, Tennis Court Rd. CB2 1Q.] | |||
* Dinner 6:30 Navadhanya, 73 Newmarket Rd, Cambridge CB5 8EG https://goo.gl/maps/Ns3mQXtwpYt | |||
==Planned Schedule== | ==Planned Schedule== | ||
* '''Sunday October 1st''': | * '''Sunday October 1st''': | ||
:* Meeting will run from 9am to 5:00pm. | :* Meeting will run from 9am to 5:00pm. | ||
:*Val, Giulia and Helen will be loitering near the entrance at 8:45am to show you to the meeting room. If you are late we should be in the room on the ground floor, left hand corner as you face the buiding entrance. You can knock on the window. (Just like in "Wuthering Heights"). | |||
==Agenda== | ==Agenda== | ||
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==Minutes and useful links== | ==Minutes and useful links== | ||
[https://docs.google.com/document/d/1wCzCkPL9ft20ZP5XnTn8IQAcxoFEduaBmzVWKN0hbU0/edit?usp=sharing google minutes] Signaling workshop hopefully this link will enable everyone to edit the doc | *[https://docs.google.com/document/d/1wCzCkPL9ft20ZP5XnTn8IQAcxoFEduaBmzVWKN0hbU0/edit?usp=sharing google minutes] Signaling workshop hopefully this link will enable everyone to edit the doc | ||
[http://wiki.geneontology.org/index.php/Annotation_Conf._Call_2017-06-27 27June17 annotation call minutes] | *[http://wiki.geneontology.org/index.php/Annotation_Conf._Call_2017-06-27 27June17 annotation call minutes] | ||
[http://www.geneontology.org/page/go-annotation-conventions#ligand | *[http://www.geneontology.org/page/go-annotation-conventions#ligand Annotation Conventions - General Ligand-Receptor Pathway] | ||
[http://wiki.geneontology.org/index.php/Signaling Ontology signaling project started 2009] | *[http://wiki.geneontology.org/index.php/Signaling Ontology signaling project started 2009] | ||
==Items agreed== | ==Items agreed== | ||
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# GO-CAM models will be created to present clear views of what is part of a pathway, what regulates the pathway, and what is causally upstream of the pathway | # GO-CAM models will be created to present clear views of what is part of a pathway, what regulates the pathway, and what is causally upstream of the pathway | ||
# The Cambridge meeting will focus on a selection of specific pathways | # The Cambridge meeting will focus on a selection of specific pathways | ||
# Annotation conference calls will spend some time | # Annotation conference calls will spend some time looking at these | ||
==Pre-meeting github tickets== | ==Pre-meeting github tickets== | ||
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{| {{Prettytable}} class='sortable' | {| {{Prettytable}} class='sortable' | ||
|- | |- | ||
! Number | |||
! Name | ! Name | ||
! Organization | ! Organization | ||
! Participate in pre-meeting discussions | ! Participate in pre-meeting discussions | ||
! Request funding for Saturday night hotel | ! Request funding for Saturday night hotel accommodation near meeting | ||
! Interested in attending Sunday 1st October | ! Interested in attending Sunday 1st October | ||
|- | |- | ||
| 1 | |||
| Valerie Wood | | Valerie Wood | ||
| PomBase (Cambridge) | | PomBase (Cambridge) | ||
| | | Yes | ||
| No | | No | ||
| Yes | | Yes | ||
|- | |- | ||
| | | 2 | ||
| Helen Attrill | | Helen Attrill | ||
| FlyBase (Cambridge) | | FlyBase (Cambridge) | ||
Line 59: | Line 63: | ||
| Yes | | Yes | ||
|- | |- | ||
| 3 | |||
| Giulia Antonazzo | | Giulia Antonazzo | ||
| FlyBase (Cambridge) | | FlyBase (Cambridge) | ||
Line 65: | Line 70: | ||
| Yes | | Yes | ||
|- | |- | ||
| 4 | |||
| Ruth Lovering | | Ruth Lovering | ||
| UCL | | UCL | ||
| Yes | | Yes | ||
Line 77: | Line 77: | ||
| Yes | | Yes | ||
|- | |- | ||
| 5 | |||
| Sandra Orchard | | Sandra Orchard | ||
| EBI-IntAct | | EBI-UniProt/GOA/IntAct | ||
| | | | ||
| No | | No | ||
| Yes | | Yes | ||
|- | |- | ||
| 6 | |||
| Petra Fey | |||
|dictyBase | |||
| Yes | |||
| Yes | |||
| Yes | |||
|- | |||
| 7 | |||
| David Hill | | David Hill | ||
| GOC/Jackson Laboratory | | GOC/Jackson Laboratory | ||
| Yes | | Yes | ||
| Yes | | Yes | ||
| Yes | | Yes | ||
|- | |- | ||
| 8 | |||
| Stacia Engel | | Stacia Engel | ||
| SGD | | SGD | ||
| | | Yes | ||
| | | No | ||
| Yes | | Yes | ||
|- | |- | ||
| 9 | |||
| Kimberly Van Auken | | Kimberly Van Auken | ||
| | | WormBase | ||
| Yes | |||
| Yes | | Yes | ||
| Yes | | Yes | ||
|- | |- | ||
| 10 | |||
| Sabrina Toro | | Sabrina Toro | ||
| Zfin | | Zfin | ||
Line 113: | Line 119: | ||
| Yes | | Yes | ||
|- | |- | ||
| | | 11 | ||
| | | Pascale Gaudet | ||
| | | GOC/nextprot | ||
| | | Yes | ||
| | | Yes | ||
| Yes | |||
|- | |||
| 12 | |||
| Chris Mungall | |||
| LBNL | |||
| To the extent I can | |||
| Yes | |||
| Yes | |||
|- | |||
| 13 | |||
| Shur-Jen Wang | |||
| RGD | |||
| Yes | |||
| No | |||
| Yes | |||
|- | |||
| 14 | |||
| Elizabeth Bolton | |||
| RGD | |||
| Yes | |||
| No | |||
| Yes | |||
|- | |||
| 15 | |||
| Penelope Garmiri | |||
| EBI-UniProt/GOA | |||
| Yes | |||
| No | |||
| Yes | |||
|- | |- | ||
| | | 16 | ||
| | | Paul Thomas | ||
| | | USC | ||
| | | Yes | ||
| No | |||
| Yes | | Yes | ||
|- | |- | ||
| | | 17 | ||
| | | Seth Carbon | ||
| LBNL | |||
| No | |||
| No | |||
| Yes | | Yes | ||
| | |- | ||
|} | |} | ||
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[[Category: GO Consortium Meetings]] | [[Category: GO Consortium Meetings]] | ||
[[Category: | [[Category: Workshops]] |
Latest revision as of 10:02, 9 April 2019
Location
- Dinner 6:30 Navadhanya, 73 Newmarket Rd, Cambridge CB5 8EG https://goo.gl/maps/Ns3mQXtwpYt
Planned Schedule
- Sunday October 1st:
- Meeting will run from 9am to 5:00pm.
- Val, Giulia and Helen will be loitering near the entrance at 8:45am to show you to the meeting room. If you are late we should be in the room on the ground floor, left hand corner as you face the buiding entrance. You can knock on the window. (Just like in "Wuthering Heights").
Agenda
Minutes and useful links
- google minutes Signaling workshop hopefully this link will enable everyone to edit the doc
Items agreed
Hopefully no further discussion required:
- All signaling ontology terms should have a defined start and end - work on the ontology is required
- GO-CAM models will be created to present clear views of what is part of a pathway, what regulates the pathway, and what is causally upstream of the pathway
- The Cambridge meeting will focus on a selection of specific pathways
- Annotation conference calls will spend some time looking at these
Pre-meeting github tickets
Attendees
Please add your name to the table and indicate if you intend to participate in the pre-meeting discussions
Number | Name | Organization | Participate in pre-meeting discussions | Request funding for Saturday night hotel accommodation near meeting | Interested in attending Sunday 1st October |
---|---|---|---|---|---|
1 | Valerie Wood | PomBase (Cambridge) | Yes | No | Yes |
2 | Helen Attrill | FlyBase (Cambridge) | Yes | No | Yes |
3 | Giulia Antonazzo | FlyBase (Cambridge) | Yes | No | Yes |
4 | Ruth Lovering | UCL | Yes | No | Yes |
5 | Sandra Orchard | EBI-UniProt/GOA/IntAct | No | Yes | |
6 | Petra Fey | dictyBase | Yes | Yes | Yes |
7 | David Hill | GOC/Jackson Laboratory | Yes | Yes | Yes |
8 | Stacia Engel | SGD | Yes | No | Yes |
9 | Kimberly Van Auken | WormBase | Yes | Yes | Yes |
10 | Sabrina Toro | Zfin | Yes | Yes | Yes |
11 | Pascale Gaudet | GOC/nextprot | Yes | Yes | Yes |
12 | Chris Mungall | LBNL | To the extent I can | Yes | Yes |
13 | Shur-Jen Wang | RGD | Yes | No | Yes |
14 | Elizabeth Bolton | RGD | Yes | No | Yes |
15 | Penelope Garmiri | EBI-UniProt/GOA | Yes | No | Yes |
16 | Paul Thomas | USC | Yes | No | Yes |
17 | Seth Carbon | LBNL | No | No | Yes |