2018 Berkeley GO Docathon
Agenda (Draft)
Rooms:
- 153 has been reserved on Tuesday, January 23rd. 248 is reserved for the other 4 days.
Monday, January 22nd
- Noctua landing page
- Noctua Quick Start
- GO-CAM Guidelines (more detailed, on wiki or readthedocs?)
- Relations - definitions, examples
Tuesday, January 23rd
- GO-CAM Guidelines
- Relations - definitions, examples
- Annotation File Pipelines
- File submissions
- Jenkins jobs and reports
Wednesday, January 24th
- GOC website - move more detailed documentation off of the website, but provide links to internal (i.e. wiki or readthedocs) pages
- Annotation Guidelines - use GO handbook chapters wherever possible
- Overall GO philosophy
- Annotation of specific areas of biology, e.g. apoptosis, signaling, transcription
- Give GO-CAM examples wherever possible
- Annotation of specific types of experiments, e.g. ChIP
- Types of gene products, e.g. transmembrane proteins
- Evidence Codes
- Annotation Extension
- Annotation Guidelines - use GO handbook chapters wherever possible
Thursday, January 25th
- GOC website - move more detailed documentation off of the website, but provide links to internal (i.e. wiki or readthedocs) pages
- FAQs
- Ontology Documentation
Friday, January 26th
Logistics
Accommodations
There are two ways travelers can secure their reservation:
1. By Phone- 1-800-325-3535 and mention "Gene Ontology" 2. Via the Web- https://www.starwoodmeeting.com/Book/GeneOntology
Getting there:
Taxis also available from either MacArthur or Ashby
Parking
We will try to reserve as many spots outside the front entrance as we can. Look for spots that say "GO meeting". if you see one, take it.
If there is none available, don't worry. Park temporarily and grab a parking pass from the person at the gate, you can then park in the garage:
Meeting Location
Berkeley Lab, Aquatic Park Offices
Lawrence Berkeley National Laboratory (LBNL), Aquatic Park office of Biosciences Operations at Berkeley Physical address: 717 Potter Street, Berkeley, CA 94710
Meeting room: room 181
Travel between hotel and meeting
- Walk, 1.3 miles
- Free Hollis Shuttle
- Taxi/Lyft/Uber
Aim to be at the lab for 9am
Participants
Name | Organization | Comments |
---|---|---|
David Hill | Jackson Laboratory | |
Kimberly Van Auken | Caltech | |
Pascale Gaudet | SIB Swiss Institute of Bioinformatics |
LBL:
- Chris Mungall
- Eric Douglass
- Seth Carbon
- Suzi Lewis