2018 NYU GOC Meeting Agenda: Difference between revisions

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=== Signaling Workshop Project ===
=== Signaling Workshop Project ===
Paul/Pascale: Can we give an overview/lessons learned summary ?


* Canonical Wnt Signaling (Kimberly VA and Helen) (https://github.com/geneontology/go-annotation/issues/1595)
* Canonical Wnt Signaling (Kimberly VA and Helen) (https://github.com/geneontology/go-annotation/issues/1595)

Revision as of 15:48, 18 April 2018

Suggestions for topics

Intro/Overview

Paul T

  • Mention Alliance
  • Beginning new fiscal year

Infrastructure Projects

  • Release pipeline/new release cycle [1] (Seth, Eric)
  • public API (Nathan, Deepak)
    • Example of use: Ribbon (Nathan)

GO-CAM and Noctua Project

  • Noctua status reports
    • 1.0 Release [2] Seth, Chris
    • Tour of the SAE: Tremayne, Paul
    • Importing Reactome into Noctua: Ben, David
    • Seeding models from GAFs: Dustin, Eric
    • Roll-out plan/discussion: Kimberley
  • Community usage of GO-CAMs
    • GO-CAM landing page [3] (Laurent-Phillippe)
    • Export to other formats and import into other databases (Laurent-Phillippe)
    • Loading GO-CAM annotations into MODS- The MGI Experience (David H)

SAE hands-on session

(Paul's suggestion) - 1.5h All curators should come with a paper or pathway that they would like to curation Suggestion: curate signaling pathways ?

Documentation and Outreach

  • Presentation of update website/Report on Documentation jamboree
  • Outreach plans (Suzi A)
    • SOPs for groups that want to submit annotations to the GOC
  • Licensing and community annotation (Seth?)
    With the possibility of a wider pool of annotation ingest, we should consider a copyright re-assignment policy to the GOC, getting pass-through agreements from re-used upstream resources (the http://reusabledata.org evaluation of Reactome, while possibly out of date, can be illustrative in the context of bulk model import), as well as the legal nature of the GOC.

Projects

Signaling Workshop Project

Paul/Pascale: Can we give an overview/lessons learned summary ?


Other projects

Quality Control Projects


Will we be talking about those??

Future New Projects

  • Alignment of Rhea, Reactome, IntAct and GO with their recommendations for moving forward. GH ticket is here [5] (Jim, Ben?)
  • Evolutionary taxon relations (Paul, Chris)
  • Enrichment in the cloud
    • Update (USC/LBL)

Other potential topics


Suggestions for topics Fall 2018

  • 'Response to' workshop (similar to the signaling WS)