|
|
| (60 intermediate revisions by 5 users not shown) |
| Line 1: |
Line 1: |
| | = AGENDA= |
| | ==<em>[https://docs.google.com/document/d/1Px8AgghIABKaGP174Av2XYXQ8NfUrkMRT1yJ8kwCgx4/edit?usp=sharing Live version now here in Google Drive]</em>== |
|
| |
|
| = Suggestions for topics= | | ==Call-in information== |
| | Zoom: https://stanford.zoom.us/j/976175422 |
|
| |
|
| == Documentation and Outreach ==
| |
|
| |
| * Presentation of update website/Report on Documentation jamboree
| |
| * Outreach plans (Suzi A)
| |
|
| |
| == Annotation ==
| |
|
| |
| * Report: Annotation group (https://github.com/geneontology/go-annotation/milestone/2)
| |
| ** Status Signaling workshop tasks
| |
| * Report: QC group: annotation review stats
| |
| ** Cancer signaling pathways review (note: I also have this under GP2Term relations below; chris)
| |
| * HTP annotations : present annotation guidelines
| |
| * Complex working group report
| |
|
| |
| * GP2Term Relations [https://github.com/orgs/geneontology/projects/13] (Suzi L, Kimberley)
| |
| ** See [[:Category:Gene_Product_to_Term_Relations]]
| |
| ** Case study: Xena and cancer signaling project (Suzi L)
| |
| ** UPDATE: GP2Term Relations coming from Noctua (Chris)
| |
| ** UPDATE/discussion: Enabling usage by users and bioinformaticians (Deepak, Laurent-Phillippe)
| |
| ** UPDATE: Display in AmiGO (Suzi L, Seth)
| |
| * GP annotations to terms that refer to 'drugs'
| |
| **https://github.com/geneontology/go-ontology/issues/15379
| |
|
| |
|
| |
| == Infrastructure ==
| |
|
| |
| * Release pipeline/new release cycle [https://github.com/orgs/geneontology/projects/11] (Seth, Eric)
| |
| ** Documentation https://github.com/geneontology/go-site/issues/555
| |
| ** UPDATE: Injection of PAINT annotations at GO Central (Huaiyu)
| |
| ** Discussion: Injection of GPADs derived from production GO-CAMs (Chris)
| |
| ** Automated QC (Eric, Kimberley)
| |
| * public API (Nathan, Deepak)
| |
| ** Example of use: Ribbon (Nathan)
| |
|
| |
|
| |
| == GO-CAMs ==
| |
|
| |
| * Noctua status reports
| |
| ** 1.0 Release [https://github.com/orgs/geneontology/projects/6] Seth, Chris
| |
| ** Tour of the SAE: Tremayne, Paul
| |
| ** Importing Reactome into Noctua: Ben, David
| |
| ** Seeding models from GAFs: Dustin, Eric
| |
| ** Roll-out plan/discussion: Kimberley
| |
| * Community usage of GO-CAMs
| |
| ** GO-CAM landing page [https://github.com/geneontology/go-site/issues/558] (Laurent-Phillippe)
| |
| ** Export to other formats and import into other databases (Laurent-Phillippe)
| |
|
| |
|
| |
| == Enrichment in the cloud ==
| |
|
| |
| * Update (USC/LBL)
| |
|
| |
| == Ontology Group ==
| |
|
| |
| * Report on ontology development group
| |
| ** action item review: https://github.com/geneontology/go-ontology/milestone/5
| |
| ** Update MF refactor (WHO? LINK?)
| |
| ** Update: Tx refactor (WHO? LINK?)
| |
|
| |
| * Report from ontology group on alignment of Rhea, Reactome, IntAct and GO with their recommendations for moving forward. GH ticket is here [https://github.com/geneontology/go-ontology/issues/14984] (Jim, Ben?)
| |
|
| |
| *Evolutionary taxon relations (Paul, Chris)
| |
|
| |
| == Suggestions for topics Fall 2018==
| |
| *'Response to' workshop (similar to the signaling WS)
| |
|
| |
|
| [[Category: GO Consortium Meetings]] | | [[Category: GO Consortium Meetings]] |